3300029432: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 045_3_10_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029432
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0282966 | Ga0243805
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 045_3_10_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 237352522
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F047126	Metagenome	150	N
F059106	Metagenome	134	N
F078693	Metagenome	116	N
F088921	Metagenome	109	N
F089005	Metagenome	109	N
F092228	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243805_101265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	30430
Ga0243805_101309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	29293
Ga0243805_102485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	13519
Ga0243805_102728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	12090
Ga0243805_106730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4499
Ga0243805_109945	All Organisms → cellular organisms → Bacteria	3079
Ga0243805_136626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	790

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243805_101265	Ga0243805_10126535	F059106	KIRVILLQKFVWIVDLKVREHLTEYLKKDIKYHRVIIGVFV
Ga0243805_101309	Ga0243805_10130935	F029444	MKVSEQLTGFELEDLMSWTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGFDGPKKAAPFFNF
Ga0243805_102485	Ga0243805_10248516	F089005	LTKSKQRSIIALALLRLATSNEESKQALKVRRTLKIEQRDNSKETRNDFE
Ga0243805_102728	Ga0243805_1027281	F078693	MVLAPVRGAERSFIKADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGEVEVEKC
Ga0243805_106730	Ga0243805_1067301	F092228	SDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGSLINDNLFYINGDKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIGDIKFDNQIYYINISDGNLYTAERIFEDKTDEYGYSLKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCQDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATRNFLYCYTINYILPRGVANSWVKSYLIVQLVIS
Ga0243805_109945	Ga0243805_1099453	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTXXXAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESSCILCSLLRYFHILSKKLQKTC
Ga0243805_136626	Ga0243805_1366261	F088921	LGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIR