3300029429: Oil enriched seawater microbial communities from Gulf of Mexico, USA - BD02T6

Overview

Basic Information

• IMG/M Taxon OID: 3300029429
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133000 | Gp0276016 | Ga0239577
• Sample Name: Oil enriched seawater microbial communities from Gulf of Mexico, USA - BD02T6
• Sequencing Status: Permanent Draft
• Sequencing Center: Lawrence Berkeley National Laboratory
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 138276283
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2
All Organisms → cellular organisms → Archaea	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Oil Enriched Seawater Microbial Communities From Gulf Of Mexico, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Oil-Contaminated → Oil Enriched Seawater → Oil Enriched Seawater Microbial Communities From Gulf Of Mexico, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → contaminated water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA: Gulf of Mexico
• Coordinates
  • Lat. (^o): 24.74
  • Long. (^o): -88.37
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002753	Metagenome / Metatranscriptome	532	Y
F027203	Metagenome	195	Y
F101886	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0239577_1003179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3614
Ga0239577_1003392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3460
Ga0239577_1036389	All Organisms → cellular organisms → Archaea	786
Ga0239577_1041719	Not Available	716
Ga0239577_1048367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	646
Ga0239577_1049495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	636

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0239577_1003179	Ga0239577_10031792	F101886	MIYQVKKEEKTMLKKIAIIGFCLFNVVLFILIGIEVAAVTPERAMLEGVTQRIYASISTLDYIMAILWGVILYTILTVKKEHFLRASYLYLGFYLCDIHFSHYMSMEMNDPYFTPGALALVAIQIGFLFWAKIRINTANLALSN
Ga0239577_1003392	Ga0239577_10033922	F101886	MLKKIAIIAFCLFNVALFIQIGIDVAAVTPEQAMLEGMTQRIYASISTLDYIMATLWGVILYTILTAKKEYFLRVSWLYLGFYLCDIHFSHYMSIEMNDPYFTPGALALVAVQIGFLFWAKIRINTANFALSN
Ga0239577_1036389	Ga0239577_10363891	F027203	VTTAPAPARYNRSKILSDIPKIPEARIVGLSRVNVPIEVERLAFTLNSLIPFSYNS
Ga0239577_1041719	Ga0239577_10417191	F002753	FTAADFATESVKLTDSDRFTPAVFEIESVKLTVSDRFTAADFATESVKLTDSDRFTPAVFEIESVKLTVSDRFTPAVFEIESVNNTDSDRFTPAVFEIESVKLTVSDRFTPAVFEIESVNDTDSDRFTGAVFEIESVKLTVSDRFTPAVFDIESVNNTVSDRFTGAVFDIESVKLTDSDRLTSAAFEIESVKLTDSDRLTSAAFDIESVKLTDSDRLTSAAFDIESVKLTDSDRFTAA
Ga0239577_1048367	Ga0239577_10483671	F101886	QVKKEEKTMLKKIAIIGFCLFNVVLFILIGIEVAAVTPERAMLEGVTQRIYASISTLDYIMAILWGVILYTILTVKKEHFLRASYLYLGFYLCDIHFSHYMSVEMNDPYFTPGALALVAIQIGFLFWAKIRINTANLALSN
Ga0239577_1049495	Ga0239577_10494951	F101886	MLKKFAIIGFCLFNVVLFILIGIEVAAVTPERAMLEGVTQRIYASISTLDYIMAALWGAILYTILTAKTEHFLRASWLYLGFYLCDIHFSHYMSMEMNDPYFTPGALSLV