3300029424: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 043_10_27_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029424
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0282950 | Ga0243789
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 043_10_27_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 188527198
• Sequencing Scaffolds: 6
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F029444	Metagenome	188	Y
F042936	Metagenome	157	N
F052660	Metagenome	142	N
F074964	Metagenome	119	N
F090484	Metagenome	108	N
F090515	Metagenome	108	N
F098313	Metagenome	104	N
F099406	Metagenome	103	N
F101355	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243789_1000051	Not Available	151437
Ga0243789_1001244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	22129
Ga0243789_1001348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	20452
Ga0243789_1001954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	14192
Ga0243789_1037185	Not Available	766
Ga0243789_1046252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	631

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243789_1000051	Ga0243789_100005131	F090484	MDIPKNPSDFFLLQIMKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNKKDLLHKLGIGYSKFKNMTGHPMFDELFRMTNSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEVVEGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTDTDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIGNMDISIQSLPNISITVDNDKELDGESIFKDIPFEELSFYNDTYLYPSSQYSSL
Ga0243789_1000051	Ga0243789_10000514	F074964	MITKKNVNKLQNAVIKENAANLVGAVKLYNALFSNGSDLKSICKALEIPAEYAVKVAALAKDKKRLVTVCSQMLPKVDDIFVKFTLYSKVYKDTNVDKEKGIEAKTADWCAENVVYGSEYKAFGFTTAESLETKKSTKWLVKETDEYKSTYVAVKIKSYSIRTVAKCVSEYLAHESTQQ
Ga0243789_1000051	Ga0243789_100005150	F099406	MAEVGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASIETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSTYLDLSIFPSTSTSGTLDEDSYAKVMDAYNNRITLGKLSFYYFSLDYFLDNDNSELKIIAVLFNNTNSEEDVSGSYIDIEMVTYIVAQDKTYRAIANTATLSNAMLSYLKFMAKTPKVVTTLASLPIDAHNIIANVASATNLSMAVSSDDVGREWQVRVNNTTGTDITQPLPTSGLFQSMSGDSVVIPKNSFIELSIWYINDKLVIRVGEQA
Ga0243789_1000051	Ga0243789_100005188	F098313	MKEKEFDFVIYPLKLIITIGLDYKTLCDRFENVELDHEGEWGDEGDLDSEVSFMNLVRDKGDDRAFKLLWNFQSENDMTIQNICHESFHAAMSVCQHCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEEEKDGKEE
Ga0243789_1001244	Ga0243789_100124410	F090515	VTTCCKAGHKTTLQGTAPGRVACLEFAEGEKRKTNIAADYAVKVPAFTALLCRYIGSIRTFLKS
Ga0243789_1001348	Ga0243789_10013488	F052660	MCILHVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDFAHWWPVAAGHIRSADALPGKSNS
Ga0243789_1001954	Ga0243789_10019541	F026489	TPKENQKSASDFDALEPRKRGCSPLLTPKGWAAPEKTEDSRLFGVKIF
Ga0243789_1006820	Ga0243789_10068205	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFPYVLPLCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTSFGFQIIFAKSFFHMSFFSFLKFI
Ga0243789_1037185	Ga0243789_10371852	F042936	KTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG
Ga0243789_1046252	Ga0243789_10462523	F029444	MEVSEQLTGFELEALLFWTVSNLQCPFREDYSLKKSGIIAEKESQILGCRFVGFD