3300029421: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 050_3_12_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029421
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0283005 | Ga0243844
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 050_3_12_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 202226077
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F071325	Metagenome	122	N
F078004	Metagenome	117	N
F087336	Metagenome	110	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243844_100633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	53624
Ga0243844_100877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	40757
Ga0243844_101127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	31735
Ga0243844_101612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	21179
Ga0243844_102050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	15566

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243844_100633	Ga0243844_10063338	F087336	MHCLLRGMVAELEQVPKAFRAAGNQRRAATKERIKDDAIGRGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP
Ga0243844_100877	Ga0243844_1008771	F071325	CRSLGFGIVYRDFPSRLRFHKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLVFEELLSCAAAYL
Ga0243844_101127	Ga0243844_10112728	F071325	VLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFLPHAVRFPATFLLVHRFYLAFEELLSCATAYL
Ga0243844_101612	Ga0243844_1016128	F042936	VWKTKEGIMKTSGIVNRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG
Ga0243844_102050	Ga0243844_10205013	F071325	HKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFLPHAVRFPAAFLLVHRFYLVFEELLSCATAYL
Ga0243844_139126	Ga0243844_1391261	F078004	SLALLSAVSEHLSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQGITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF