3300029408: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 001_6_2_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029408
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133095 | Gp0281864 | Ga0242748
• Sample Name: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 001_6_2_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 166154776
• Sequencing Scaffolds: 14
• Novel Protein Genes: 15
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Herelleviridae → unclassified Herelleviridae → Herelleviridae sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	5
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F047125	Metagenome / Metatranscriptome	150	N
F057001	Metagenome	137	Y
F064725	Metagenome	128	N
F073656	Metagenome	120	N
F075481	Metagenome	119	N
F077313	Metagenome	117	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F083452	Metagenome	113	N
F089592	Metagenome	109	N
F093883	Metagenome	106	N
F102167	Metagenome	102	N
F106193	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0242748_1000888	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	16074
Ga0242748_1007170	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Herelleviridae → unclassified Herelleviridae → Herelleviridae sp.	4289
Ga0242748_1011573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2958
Ga0242748_1016765	Not Available	2156
Ga0242748_1017693	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2052
Ga0242748_1019914	Not Available	1842
Ga0242748_1020507	Not Available	1787
Ga0242748_1023662	Not Available	1557
Ga0242748_1025626	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1441
Ga0242748_1028363	All Organisms → cellular organisms → Bacteria	1303
Ga0242748_1040867	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	871
Ga0242748_1054157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	616
Ga0242748_1059017	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	554
Ga0242748_1062709	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	512

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0242748_1000888	Ga0242748_100088811	F073656	MEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANRGEIPSVLFFDIRTTDAALLPRIEAAEHNYLLDPSTVTEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWTFVNPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRNGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH
Ga0242748_1007170	Ga0242748_10071702	F077313	KRKIPKYQEAGEVTPIMPGNVVGLQGIGVEPLVSSTRIGFDIQHPDINTIDTSDLNAIVDSNKKVDESGSTDVFDFTAIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRQQSQMRYKNGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVEQPGEAPMEAMGQKHADGGTPVSLEQGTEVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKVKIGLKSVYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIIFRSMKEYGLTEEDIADAKKELLKKVAGIRQKMEKGGSSLFDYLLTFRPVENKYNNKDNTFGYQRQGQDGSYGGINTDERLEYYKTFMPLAYDAYMSAPKATAAKALQDAIYSTTGGWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKASYHDRMRDNKFGQYSSSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDIVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEDPDVKLDMPELIDPNTLPKTNTNAGKSNGGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGKYINEVEQGNVARRTWADNVNAQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIVDPQGDILSYRRLYPAQEVTKGKKG
Ga0242748_1011573	Ga0242748_10115733	F047125	DHMDVVLLLMVLGVMLSGFWAADALDHIRKEIIRQEGKRRGWWS
Ga0242748_1016765	Ga0242748_10167653	F089592	MKEILKSKKVLVEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGLDKNEIDKLVKQRVDNIMKPFEEMSQMDLSQTNLEFWDDAKDKIFMGKVYNTANTVDLFYLYLAVFSGMLTPQEMDGDPVFMNSMFCFVEKDNMKDFVQQREINKMNISYKFISALKKGGDDRQAVIDLLLYIGIVTRPDFTEDEYYTGSLSNWMNEKKTNVDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDIRTSAEFLATKKDFINIKANVLDEYEEIMSMSNIDDKSKTKKVKDIKKKDDVEEGDKIKEE
Ga0242748_1017693	Ga0242748_10176931	F083452	MSGRIKIKSKDKDKRPKIDVFKVIENRFKNMNELRDLIDMDPRKGLVRIRDGPGFREVERGGCLHRNYLNLLEEELGAKLSIDLIERYI
Ga0242748_1017693	Ga0242748_10176935	F102167	QIKKYLPAGWDVVDLIDHGIIDLDIMNGKMIGEYVAVLMIKSYDKTNGHILTTFSFHDKDMEKLRMLIGNAIMAVGYRNNPLTGDGNTAIK
Ga0242748_1019914	Ga0242748_10199143	F064725	REGRLDFFCINDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLICEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITERIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKLV
Ga0242748_1020507	Ga0242748_10205073	F093883	MIIMRNMEDKDIKTEIRDYLKEEADTHIRHWIAIKRESKRLYSEIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKGIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYKLLMKQYNEFKDMKANATGKTKADE
Ga0242748_1023662	Ga0242748_10236621	F075481	MIRLRISLKAVFCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGRRDSTVMVDSLGIDKTITGIEDIDKKTDIEHKDIDDKEESRWPMAIIFMSILGILVVLFVLLKRFGLIK
Ga0242748_1025626	Ga0242748_10256261	F057001	MQVPRVRANLMTSKELNKVQNEVKKASEKTLTGAVKAWCQLFKSGKEVNEILKENDIKVDKDIVPALVSLAKDKEVVIQLCKEILPRVDETFCAYKEIERVYFDKQEQDKNTKLSEDKVAEISITGKAHKRFGYNEPVEYEGGVYYDVFNGSDKRIVKCAVPIKRYTYNLIAKCITYYLTHPKNER
Ga0242748_1028363	Ga0242748_10283632	F042936	MGRGGDKGRAWKTKEGIMKPSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGK
Ga0242748_1040867	Ga0242748_10408673	F106193	AERERIERSMMNHSSSTAVSDMEYASRSTAGCMVMQDPLQTMERDVVSIYKQVRTKGDGVGVSYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILNGRAEHIKP
Ga0242748_1054157	Ga0242748_10541572	F047125	MDVVLLLMVLGVLLSGFWAADALDHMRKEIIRQEGKRRGWWS
Ga0242748_1059017	Ga0242748_10590171	F078006	MDNVLKRAAAELKEAGCRVFAWQDDTYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSCGSGSGCCVKEEATFDLATALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKII
Ga0242748_1062709	Ga0242748_10627092	F078005	RHIKITHMKKSKFVKELERIIDMVKTGDDGFEYGGKVIFYKEDDDSYEISVKNIEMNLMVEANTMASMDDRTFACLMGEVYTQKFTKAVTISEDEDDEDN