3300029387: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 094_5_2_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029387
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0283155 | Ga0243994
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 094_5_2_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 198133928
• Sequencing Scaffolds: 3
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F067844	Metagenome	125	N
F076064	Metagenome	118	N
F078693	Metagenome	116	N
F090514	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243994_100216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	81215
Ga0243994_134250	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	839
Ga0243994_151817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	540

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243994_100216	Ga0243994_10021662	F026489	LFVLRSAGAEAVAEGCSLLTPKENQKSASDFDALEPRKRGYSPLLTPKKWATPEKTEDSRLFGVKIF
Ga0243994_100216	Ga0243994_10021668	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVLPRLTGAKWFVILLTIVPAGSRTRAGSSLPLIPASNIFLKQTPRRGLPLAWNAGAGSFLFCG
Ga0243994_127099	Ga0243994_1270991	F067844	MNTLAAETASAWYLILNRKLQTLPIYKAQLSSPLPR
Ga0243994_134250	Ga0243994_1342501	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSVRRQIRLCAPDLKR
Ga0243994_151817	Ga0243994_1518171	F078693	MVLAPVRGAERFFIKADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGEVEVEKC