3300029378: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 091_4_27_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029378
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0283139 | Ga0243978
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 091_4_27_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 254024651
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	6

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F050793	Metagenome	145	N
F067720	Metagenome	125	Y
F067845	Metagenome	125	N
F071325	Metagenome	122	N
F091068	Metagenome	108	N
F092227	Metagenome	107	N
F099269	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243978_1000840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	26018
Ga0243978_1001210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	19967
Ga0243978_1002042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12892
Ga0243978_1013412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2608
Ga0243978_1018165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2030
Ga0243978_1020335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1854
Ga0243978_1027196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1473
Ga0243978_1053277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	860
Ga0243978_1067331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	710
Ga0243978_1084927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	579

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243978_1000840	Ga0243978_10008401	F099269	VGELLLLDDLGDRAGGASVLASATGDAGILVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCASV
Ga0243978_1001210	Ga0243978_10012101	F071325	CRSLGFGIVFRDFPSRLRFHKFQYCSIFKVLLALLLDSSIIISNVVLFVKHFFDIFLSFPNAFLKAFHPHAVRSPAAFLLVHRFYLAFEELLSCATAYL
Ga0243978_1002042	Ga0243978_100204215	F071325	FGIVFRDFPSRLRFHKFQYCSIFKVLLALLSDSSIIISKVILFVKHFFDIFLSFPNAFLKAFHLHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0243978_1013412	Ga0243978_10134121	F026489	EAVDGRCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF
Ga0243978_1018165	Ga0243978_10181651	F026489	RSLLTPKENQKSASDFDALEPRKRGCSPLLTPKGWAAPEKTEDSRLFGVKIF
Ga0243978_1020335	Ga0243978_10203352	F067845	MKHWKNLLVCLLAGVLVLGVLTACSGLGNVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADNNMSHTDDLNAFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAELLEDAAGHSELGAAFIDYNGTAYVVAVFR
Ga0243978_1027196	Ga0243978_10271965	F067720	MASTTYRHLGDVTEMFAAQEQFRHITKMVCARFRGLTKTYHFADVVKMVTFCHRFAVIGSMVRNAGQLPQPFWLGAACGGGSRSAARCAART
Ga0243978_1053277	Ga0243978_10532771	F050793	FCNGGGNMRKQVLVPENVEMADIHAIQTRIKKHNLLTTALLIPLFAGCALRESNETLGGIVFVLSIALMVLGFISGRDDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSDYRVQLGVLDEKTGAWENDEQDEVFPTLADVREYASQEGYEPMDVDFEQMTDEEFQQFLDRSRI
Ga0243978_1067331	Ga0243978_10673311	F091068	MNEKNQQVSDEQIDALIRSGLWQDEQPLTADEEKLADAAFARAMAKIDRKAKRQKRRTVLHMLDRVVRVAACLIVAVGIAFPIALANSEAFREQILQLVLSINPETGMAHVGMKPAKEEQTANVPRMDVPDGWEGLFFPTFLPDSLPLVRCETTRGDQVHSEAYYADETRSLRFEEQDNLDGWNVRAADARVLTIYLHSVPGYLIDRQTEDTHEVSIIW
Ga0243978_1084927	Ga0243978_10849271	F092227	VFMNEQKRKRMLRIACLLLAGVFVLSLLGSIFMMLLF
Ga0243978_1100126	Ga0243978_11001261	F092227	HLAIMNEEKRKRFLRVGCLLLAGVFLLSVLGSVVLMLLV