3300029377: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 075_4_30_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029377
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0283064 | Ga0243903
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 075_4_30_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 264496329
• Sequencing Scaffolds: 14
• Novel Protein Genes: 17
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F039198	Metagenome	164	Y
F044555	Metagenome / Metatranscriptome	154	N
F052660	Metagenome	142	N
F056682	Metagenome	137	Y
F059106	Metagenome	134	N
F068855	Metagenome	124	N
F070133	Metagenome	123	N
F078004	Metagenome	117	N
F080163	Metagenome	115	N
F081354	Metagenome	114	Y
F089005	Metagenome	109	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243903_1000026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	231399
Ga0243903_1002107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	18682
Ga0243903_1002422	All Organisms → cellular organisms → Bacteria	16447
Ga0243903_1002953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	13442
Ga0243903_1004207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	9304
Ga0243903_1006378	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5713
Ga0243903_1008782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	3967
Ga0243903_1009612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3608
Ga0243903_1013878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	2459
Ga0243903_1019761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1747
Ga0243903_1021261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1634
Ga0243903_1024297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1445
Ga0243903_1037973	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	984
Ga0243903_1049362	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	785

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243903_1000026	Ga0243903_100002679	F039198	MQITNTEIQGTKYVQIYVTEEELQKKETKDLVKKYKQEKYSVAIFVSGKENYPEILEKIITKQVELNRNVC
Ga0243903_1002107	Ga0243903_100210710	F026489	LVAKENQKTTSDFDALEPRKRGCSPLLTPKRWAAPEKTEDSRLFGVKIF
Ga0243903_1002422	Ga0243903_100242217	F080163	MKTIKFLQESFETKERFQQEISIKYSYNRDTVESIDFRINQRNIRYFSEAMQNFENSLVNEFKEKKNNFCDAKQFLESINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESEILDSEIEWLQEKLNLIREEICKLIGVNPNLEKQGHEDNYVFNLNIDSDNQIGFFLQETEL
Ga0243903_1002422	Ga0243903_100242220	F044555	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNIPTVPNLEKPIEIQVSTIRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0243903_1002953	Ga0243903_100295315	F089005	LTKSKQSSTIALALLRLATSNEESKQALKVRRTLKIEQRDNSKETRN
Ga0243903_1004207	Ga0243903_10042073	F052660	MCILHILPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYRQFLHGGILMGIALPIPSHRAKSHDFACWWPATAGHSRSADALPGKSNS
Ga0243903_1006378	Ga0243903_10063782	F068855	VPTVEAQGPQVRKSLALQGLQAEKEXXXXERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGATW
Ga0243903_1008782	Ga0243903_100878210	F105375	MKNIETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0243903_1008782	Ga0243903_10087827	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIYNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDDFYNYSXXXF
Ga0243903_1009612	Ga0243903_10096124	F052660	MCILRILPENTPEKIGQERAGTEWTVVKSKIRLRIRNRSCGRFLHGGILMGIALPIPSHRAKSHDFAYWWPAAAGHSRSAD
Ga0243903_1013878	Ga0243903_10138783	F059106	ASVWKIRVILLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVLV
Ga0243903_1019761	Ga0243903_10197612	F056682	MKMQSRAGKVANQPIGQSKTHSASFGAFSSKNRITFPIQELGKIHENQEVL
Ga0243903_1021261	Ga0243903_10212612	F056682	MKMQSRAGKVANQSVGQSEMYPASFWAFPSKNRSTFPIQELRKNRENQEVL
Ga0243903_1024297	Ga0243903_10242971	F039198	MQITNTEIQGTKYVQIYLTEDELQKKETKDLAQKYKQEKYSVAIFVTGKENYPEILEKIITKQVELNRNVC
Ga0243903_1037973	Ga0243903_10379731	F070133	MKRLLGLLMAVMVMMGGMAGAEASTDNASMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEKIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLRIYDWSFCAFPDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNSYISDAACIGQTVYFDIYLTNQQSEILFYDMKQQNITDSQTLHTANDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEH
Ga0243903_1049362	Ga0243903_10493623	F081354	VKDFSSIFPESRRRSPLKKGAVTEIPLEYGKTEVQIPFEPLQAAISSMELPKNFENKKLPNTLR
Ga0243903_1068022	Ga0243903_10680221	F078004	LSAVAGSAALDVHMLRHTLIITIINALYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF