3300029353: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 050_3_13_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029353
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0283006 | Ga0243845
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 050_3_13_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 199367441
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F062845	Metagenome	130	N
F088914	Metagenome	109	N
F088921	Metagenome	109	N
F092227	Metagenome	107	N
F097493	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243845_100291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	98789
Ga0243845_100316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	92608
Ga0243845_111850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1939
Ga0243845_114387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1526
Ga0243845_114995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1446
Ga0243845_116256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1307

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243845_100291	Ga0243845_10029165	F092227	MKEEKRKRILRVGCLILAGIFALSMLGSVVMLLLV
Ga0243845_100316	Ga0243845_10031631	F062845	MKKTPFILHEKFRSDNNEQRKEDFQKEFERYIIDGLLNAVPSRACA
Ga0243845_111850	Ga0243845_1118506	F097493	MYKFHMKNGTAYFYEHGVEIDGTVYGIHTDRDILRIKRRIVNDKFAETDDNFDMDTEIAKIQHTDITFEQPTSEQLSQIQSKTFDSMSDMKQYVQSVMNGELTXXXXINAMLLLKIAEMEVAITNEQTTN
Ga0243845_114387	Ga0243845_1143872	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGKFIAFSAWYAAKALEMDVN
Ga0243845_114995	Ga0243845_1149951	F026592	CQNRLRTASPQGIAALAAQGGVATLAERSDATFSVMQFSSADGE
Ga0243845_116256	Ga0243845_1162562	F088921	LEAAKKIAVKTSALGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVTNKSAMIRDKMRSKS