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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029346 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133117 | Gp0282984 | Ga0243823 |
| Sample Name | Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 047_3_10_stool_1 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Institute for Genome Sciences, University of Maryland School of Medicine |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 177435481 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 9 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 4 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 2 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. ATCC BAA-442 | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Baltimore | |||||||
| Coordinates | Lat. (o) | 39.28846264 | Long. (o) | -76.62594594 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026489 | Metagenome | 197 | N |
| F032286 | Metagenome / Metatranscriptome | 180 | Y |
| F055715 | Metagenome | 138 | N |
| F056682 | Metagenome | 137 | Y |
| F067720 | Metagenome | 125 | Y |
| F068811 | Metagenome | 124 | N |
| F068855 | Metagenome | 124 | N |
| F078693 | Metagenome | 116 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0243823_100101 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 186978 | Open in IMG/M |
| Ga0243823_100452 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 79429 | Open in IMG/M |
| Ga0243823_100619 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 59430 | Open in IMG/M |
| Ga0243823_100668 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 55857 | Open in IMG/M |
| Ga0243823_100686 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 54370 | Open in IMG/M |
| Ga0243823_102609 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. ATCC BAA-442 | 9163 | Open in IMG/M |
| Ga0243823_105031 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 3896 | Open in IMG/M |
| Ga0243823_105341 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 3635 | Open in IMG/M |
| Ga0243823_105423 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 3566 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0243823_100101 | Ga0243823_100101132 | F026489 | LTPKENQKSASDFDALDPRKRGYTPLLTPKQWATPEKTEDSRLFGVKIF |
| Ga0243823_100452 | Ga0243823_1004522 | F055715 | LTKANEFDRINELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAEILDN |
| Ga0243823_100619 | Ga0243823_10061948 | F078693 | MVVAPVRGAERFFIKADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGVVETEK |
| Ga0243823_100668 | Ga0243823_1006687 | F067720 | MVSTTYEHFVDVNKMYAAQEQFRRATKMVCACFRDLTKTYHFAVLGNMVRNAGQLPQPFWLGAACGGGSCGAARCAART |
| Ga0243823_100686 | Ga0243823_10068635 | F026489 | VASFADEKFLLAEGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKRRATPKKTEDSRLFGVKIF |
| Ga0243823_102609 | Ga0243823_1026099 | F032286 | VTPVRHRALIFDVRLFAGNAADDMLVTGCTFRFCRLLCLCVKRRNIILNGKRHSLLNSALFHADNRTEQKTISPFSLALIFTFDFAALSERRSYPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKMSENAPKNADFHAYGQDRKRAEI |
| Ga0243823_105031 | Ga0243823_1050314 | F056682 | MKTQSRAGKAANQPIRQGEIYSASFGAFPSKNRSTFPIQKLGKIYENQEVL |
| Ga0243823_105341 | Ga0243823_1053412 | F068811 | MDQDGSEHNICSNREGLCPGKKQHGASGWKKIFQRGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI |
| Ga0243823_105423 | Ga0243823_1054233 | F068855 | MPQFXXXXARKTLALQGLQAEKENKNANVRNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGWAVW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |