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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029330 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133095 | Gp0281924 | Ga0242808 |
| Sample Name | Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 009_6_3_stool_1 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Institute for Genome Sciences, University of Maryland School of Medicine |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 196145360 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 9 |
| Associated Families | 9 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Baltimore | |||||||
| Coordinates | Lat. (o) | 39.28846264 | Long. (o) | -76.62594594 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026592 | Metagenome / Metatranscriptome | 197 | Y |
| F067720 | Metagenome | 125 | Y |
| F074964 | Metagenome | 119 | N |
| F078004 | Metagenome | 117 | N |
| F078693 | Metagenome | 116 | N |
| F089005 | Metagenome | 109 | N |
| F090484 | Metagenome | 108 | N |
| F098313 | Metagenome | 104 | N |
| F099406 | Metagenome | 103 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0242808_100129 | Not Available | 150748 | Open in IMG/M |
| Ga0242808_100589 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 58960 | Open in IMG/M |
| Ga0242808_102401 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii | 13528 | Open in IMG/M |
| Ga0242808_103365 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 8691 | Open in IMG/M |
| Ga0242808_126975 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 718 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0242808_100129 | Ga0242808_100129187 | F098313 | MKEKEFDFVIYPLKLIITIGLDYKTLCDRFENAELDHEGEWGDEGDLDSKASFLNLVRDKGDDRAFKLLWNFQSENDMTMRNICHESFHAAMSVCQHCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEEEKDGKEN |
| Ga0242808_100129 | Ga0242808_10012932 | F099406 | MAEIGYNSKFEGQEVDSRLENVVQAAPGTSSESGKGGLIPAPPAGSQDGSKTLLSDMTWGDHITKQYVDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSSYFDLSIFPSTSGTLDEDSYAKVLNAYNNNITLGKLSFYYFSLDYFLDNDNSELKIIAVLFNNTNSKEDVFGSYIDIEMVTYVVSQDKTYRAIANTATLSNDMLSYLKFMAKTPNVVTTLASLPIDAHNIIANVASATNLSMAVSAEDVGREWQVRVNNTTGTDITQPLPTSGLFQSMSGDSVVVPKNSFIELSIWYINDKLVIRVGEQA |
| Ga0242808_100129 | Ga0242808_10012952 | F090484 | MKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFNELFRMTDSTFVARRYRVNGVQLTLGCGKVNLLKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKELVSMAIQDKLVKRFENVQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKETHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGLADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVRAEQFKEKIENMDIRTQSLPNIGTTVDNDKELDGESVFKDIPFEELSFYNDTYLYSSSQYSSL |
| Ga0242808_100129 | Ga0242808_10012978 | F074964 | MITKKNVNKLQNAVIKENAANLVGAVKLYNALFANGADLKAICKALEIPAEYAVKVAALAKDKKNLVAVCSQMLPKVDNTFVKFTLYSKVYKDSNIDKEKGVEAKTADWFAENVVYGSEYKAFGFTTAESLETKKSTKWLIKETDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNQQ |
| Ga0242808_100208 | Ga0242808_10020891 | F078004 | MSTPFYNNIIFFQITVFYVPAVSRRIRSLALLSAVSEHLSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQGITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTILIIGTIFHNTF |
| Ga0242808_100589 | Ga0242808_10058981 | F067720 | MASTTYEHFVDTSKMYAVQRRFRDLTKTFCDFVKVNKIDHLGNVTVMVRNAGELPQPFWLGAACGGGSCSAATVPART |
| Ga0242808_102401 | Ga0242808_1024011 | F089005 | LTKSKQSSTIALALLRLATSNEESKQALKVRRTLKIEQRDNSKETRNDFEGSSKNYSEMYTKKHHK |
| Ga0242808_103365 | Ga0242808_1033652 | F078693 | MVRAPVRGAERFFIKADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPKGEVETEKS |
| Ga0242808_126975 | Ga0242808_1269752 | F026592 | RTASPQGIAALAAQGGVATLTERSDATFSVGQFSSADRE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |