3300029322: Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-59_Run3

Overview

Basic Information

• IMG/M Taxon OID: 3300029322
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133112 | Gp0282518 | Ga0243376
• Sample Name: Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-59_Run3
• Sequencing Status: Permanent Draft
• Sequencing Center: Zhejiang University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 97366718
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-P9312	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Hangzhou
• Coordinates
  • Lat. (^o): 30.0
  • Long. (^o): 120.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F047125	Metagenome / Metatranscriptome	150	N
F052660	Metagenome	142	N
F062845	Metagenome	130	N
F067845	Metagenome	125	N
F076189	Metagenome	118	N
F087335	Metagenome	110	N
F090514	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243376_100230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	40898
Ga0243376_100500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	16245
Ga0243376_103684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	3077
Ga0243376_107365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1987
Ga0243376_107877	Not Available	1900
Ga0243376_111212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1486
Ga0243376_113303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1302
Ga0243376_124643	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-P9312	771

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243376_100230	Ga0243376_1002306	F090514	MNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADILPRLTGAKWFVILLTIVPAGSRARAGSSLPLSPASIFFETDATKGSAFGMECRGRPFFIFCG
Ga0243376_100500	Ga0243376_1005003	F047125	MDVVLLLIVLGVMLSGFWAADALDHIRKEIIRQEGKRRGWWS
Ga0243376_103684	Ga0243376_1036843	F087335	MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIKPTLNEVGEPELLIGCVTDETVEEVYQRVSNYDFDEPCAGNMPS
Ga0243376_107365	Ga0243376_1073651	F026592	CCLRTASPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE
Ga0243376_107877	Ga0243376_1078773	F067845	MKHWKNLFVCLLAGVLALGVLTACSGLGSGNTGTDAEKAAELAQQLGVAYAPELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGHTDDLNAFLYWSGCYGVPNDVTVALLLDDSAAMTAWLYAPQADSAAAKLLEDAVGHSEMGAAFIDYNGTAYVVAVFR
Ga0243376_111212	Ga0243376_1112122	F076189	VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLRAIQSAQKQLRMLCNFHENTFWLLIFYANYAIL
Ga0243376_113303	Ga0243376_1133032	F052660	MCILRVLPENTPEKIGQERARTEWTVVKSKIRLCIRNRSYGRFLHGSILMGIALPIPAHRAKSHDFACWWPAAADHSRSADALPGKSNF
Ga0243376_124643	Ga0243376_1246432	F062845	MKKTPFILHEKFRSDNNEQRKEDFQKEFERYIIDRLLNSVPSRACT