3300029317: Oil enriched seawater microbial communities from Gulf of Mexico, USA - BD02T18

Overview

Basic Information

• IMG/M Taxon OID: 3300029317
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133000 | Gp0276017 | Ga0239578
• Sample Name: Oil enriched seawater microbial communities from Gulf of Mexico, USA - BD02T18
• Sequencing Status: Permanent Draft
• Sequencing Center: Lawrence Berkeley National Laboratory
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 207903654
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Oil Enriched Seawater Microbial Communities From Gulf Of Mexico, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Oil-Contaminated → Oil Enriched Seawater → Oil Enriched Seawater Microbial Communities From Gulf Of Mexico, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → contaminated water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA: Gulf of Mexico
• Coordinates
  • Lat. (^o): 24.74
  • Long. (^o): -88.37
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027203	Metagenome	195	Y
F101886	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0239578_1023041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1542
Ga0239578_1034481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	1151
Ga0239578_1036853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	1094
Ga0239578_1071673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	623

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0239578_1023041	Ga0239578_10230412	F101886	MLKKIAIIGFCLFNVVLFILIGIEVAAVTPERAMLEGVTQRIYASISTLDYIMAILWGVILYTILTVKKEHFLRASYLYLGFYLCDIHFSHYMSMEMNDPYFTPGALALVAIQIGFLFWAKIRINTANLALSN
Ga0239578_1034481	Ga0239578_10344812	F101886	KKSAIIGFCLFNVVLFILIGIEVAAVTPERAMSEGVTQRIYASISTLDYIMAALWGAILYTILTAKTEHFLRASWLYLGFYLCDIHFSHYMSMEMNDPYFTPGALSLVVIQAWFLYWAKNKINAANAAVPS
Ga0239578_1036853	Ga0239578_10368532	F101886	MLKKTAIIGFCLFNVVLFILIGIEVAAVTPERAMLEGVTQRIYASISTLDYIMAILWGVILYTILTAKKEHFLRASYLYLGFYLCDIHFSHYMSIEMNDPYFTPGALALVAIQAGFLFWAKNRINAANLALSN
Ga0239578_1071493	Ga0239578_10714932	F027203	SDIPKIPEARIVGLSRVNVPIEVERLAFTLNSLIPFSYNS
Ga0239578_1071673	Ga0239578_10716732	F101886	IIGFCLFNVAFFIQIGIEVAAVTPEQAMLEGMTQRIYASISTLDYIMAALWGAILYSILTAKKEHFLRASYLYLGFYLCDIHFSHYMSIEMNDPYFTPGALALVVIQAGFLFWAKTRIHAVSSSLSN