3300029314: Activated sludge microbial communities from Sewage Treatment Plant in Aalborg, Denmark - MBR_Gel1

Overview

Basic Information

• IMG/M Taxon OID: 3300029314
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0132982 | Gp0275462 | Ga0239302
• Sample Name: Activated sludge microbial communities from Sewage Treatment Plant in Aalborg, Denmark - MBR_Gel1
• Sequencing Status: Permanent Draft
• Sequencing Center: Aalborg University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 110368799
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylotenera → unclassified Methylotenera → Methylotenera sp.	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Salsipaludibacterales → Salsipaludibacteraceae → Salsipaludibacter → Salsipaludibacter albus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Comammox Microbial Communities From Various Environments And Locations In Europe
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Comammox Microbial Communities From Various Environments And Locations In Europe

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Denmark: Aalberg
• Coordinates
  • Lat. (^o): 57.049957
  • Long. (^o): 9.865377
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006745	Metagenome	365	Y
F015419	Metagenome / Metatranscriptome	255	Y
F022276	Metagenome / Metatranscriptome	215	Y
F029377	Metagenome / Metatranscriptome	188	Y
F033108	Metagenome / Metatranscriptome	178	Y
F054974	Metagenome	139	Y
F078309	Metagenome / Metatranscriptome	116	Y
F085731	Metagenome	111	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0239302_100041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	129927
Ga0239302_100582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	26490
Ga0239302_100944	All Organisms → cellular organisms → Bacteria → Proteobacteria	19054
Ga0239302_102018	Not Available	9814
Ga0239302_103076	All Organisms → cellular organisms → Bacteria	6217
Ga0239302_105577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylotenera → unclassified Methylotenera → Methylotenera sp.	3082
Ga0239302_112726	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1171
Ga0239302_114071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Salsipaludibacterales → Salsipaludibacteraceae → Salsipaludibacter → Salsipaludibacter albus	1036
Ga0239302_114661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	990

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0239302_100041	Ga0239302_10004124	F006745	MRTSRRSERASSALAIYIIILVAFQVFLLTVAVEAFMSDDESLAWASAIISVALAGGSALLFRYLKP
Ga0239302_100582	Ga0239302_10058227	F006745	MRTSQRDTRASSAVAVYVIILVAFQVFLLTVAVEAFATDDESLAWATAGVSIALAAGSAVLLRYLRP
Ga0239302_100944	Ga0239302_10094410	F022276	LGELLVVAIAFGIIFGARKFCDLIGAPIWFAKFLFICVSLVATYFLAEASIPEYNKPWGVWIAMVCASFGIIAVGFILFQQIEKEENDRKARLSRDTHHF
Ga0239302_102018	Ga0239302_1020182	F085731	MSQQLFPLLVRVHVMVQMACRNLRVRTRDAWLSRHEEDGVDEAVTKMIWLAVGIVVAIAATSFFTAKFNQARDNVPDPVAP
Ga0239302_103076	Ga0239302_1030766	F054974	MNTTRWNPSRLIVGTVLVLVAALLFLFGDGNFSTAGIVAIAVLGLISIAISRKT
Ga0239302_105577	Ga0239302_10557710	F015419	MKYELKITDEHGNEHLYNVVRSSSDEPKNLNDFILEALSISEDKRQLPFITQCPNGLEVFPSIKMKFENYGSPLAIS
Ga0239302_112726	Ga0239302_1127262	F029377	MKERTHSLPSFSAWLNKGFDLRAHASQMADARTDPEISPSSIFLAVFHSFVFRLPSFQQLDSELSHSHLQRWIGAERAFGDDTLRYSLCGFDLGPLEAMLVDVNRRLKRGKXXXXXXX
Ga0239302_114071	Ga0239302_1140712	F033108	VQTSRVSADDSSIDPVPDAVVLTLDEVFRVLEGLEDARLELRERGAAPGLQDELATVIRVLHGKLGLDEGGVP
Ga0239302_114661	Ga0239302_1146613	F078309	MTLPLRIELAMTFKAVFPDILAPARSGQGRPGAVEAVSGCNILILPLDASNLRP