3300029246: Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002664-33

Overview

Basic Information

• IMG/M Taxon OID: 3300029246
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0192946 | Ga0168681
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002664-33
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 185639357
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F047126	Metagenome	150	N
F060985	Metagenome / Metatranscriptome	132	N
F067844	Metagenome	125	N
F074899	Metagenome / Metatranscriptome	119	N
F087335	Metagenome	110	N
F087336	Metagenome	110	N
F088920	Metagenome	109	Y
F090513	Metagenome	108	N
F090515	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168681_100362	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	58964
Ga0168681_100437	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	52245
Ga0168681_102726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	8648
Ga0168681_102898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	8113
Ga0168681_104720	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4968
Ga0168681_106200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3914
Ga0168681_106765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	3604
Ga0168681_106867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	3570
Ga0168681_139128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	781
Ga0168681_143701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	696

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168681_100362	Ga0168681_1003623	F090515	VSTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVSAFTALLCRHIGSIRTFLKS
Ga0168681_100437	Ga0168681_10043749	F088920	LFVKWNPKNHHFIFLFLAFFSFVSANLHHYPAFWAGLILHLILHFSQKVAIFALKRVILLLFVPTLFFAGLSEFSPQTSSKISGQTSLHQPWLSPYCLFKD
Ga0168681_102726	Ga0168681_1027264	F090513	MAKYVRKMEWKLLRIKHILYMRPFGALKIAPQSIGNKNGTKAVLQGWAAAFVPYMLSFTXXXXXXXX
Ga0168681_102898	Ga0168681_1028987	F047126	VYLKTKKMTNISQTQAGFKSKSLGSLCGFQGFLTQNPAALVETDDNFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0168681_104720	Ga0168681_1047204	F087336	MHCLLRGMVAELEQVSKAFRAAGNQRRAAAKERIRDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP
Ga0168681_106200	Ga0168681_1062003	F074899	MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVGSSNLPSSSNINRLNRLI
Ga0168681_106765	Ga0168681_1067657	F067844	NTLAAETASAWYLILNRKLQTLPIYKAQLSSPLPRPLTMGTQQVSAGAAVITPQHRSYRVPQGSPQVFGGP
Ga0168681_106867	Ga0168681_1068671	F026592	NSISCCLRTASPQGIDAQASQGSVAPLTERSDETFSVKQFFSADRE
Ga0168681_139128	Ga0168681_1391281	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKYEIIKVIDFLRHAETNLGMCRIFDNQNHELWHSVIKPWFQPERFGITHLWFSSGFSHIGYGEYHIIRSNRWLKTPIDRINREYYIFGYWFPTYKKYIPYRIRVLKLALRDLERIKEEYGKN
Ga0168681_143701	Ga0168681_1437012	F087335	MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTADTEMCILPCFYHAPMCKGVLINLDDGTTLRIEPFLNKEGEPELLIGCVTEETVGEVYQWVSNYD