3300029243: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012057-18

Overview

Basic Information

• IMG/M Taxon OID: 3300029243
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0192978 | Ga0168713
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012057-18
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 185445425
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F056682	Metagenome	137	Y
F062845	Metagenome	130	N
F067720	Metagenome	125	Y
F074899	Metagenome / Metatranscriptome	119	N
F081354	Metagenome	114	Y
F084124	Metagenome	112	Y
F087335	Metagenome	110	N
F088921	Metagenome	109	N
F089054	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168713_100101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	116791
Ga0168713_100364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	56965
Ga0168713_101896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	15286
Ga0168713_104089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6646
Ga0168713_108041	All Organisms → cellular organisms → Bacteria	3280
Ga0168713_110405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2514
Ga0168713_110707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2442
Ga0168713_118783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1388
Ga0168713_144036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	601
Ga0168713_146386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	573

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168713_100101	Ga0168713_100101158	F067720	MASTTYDHFVDVNKMYAAQEQFRHVTKMVCGRFRDLTKTYHLGNVPVMVRNAGQLPQPFWLGTACGGGSCSAARCAART
Ga0168713_100364	Ga0168713_10036429	F084124	LPFGGLNTTALAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLYRKIFMGAAQTRNF
Ga0168713_101896	Ga0168713_1018964	F081354	LVRENQQSSAHNFVKDFSSIFPKSRRRSPLKKGAGCKNPLENGKAEVQILFEPLLTAISSMELPKNFEE
Ga0168713_104089	Ga0168713_1040892	F042936	VWKPKEGIMKTSEIVDRGEDTIRNFEKVEQKGALTPPYLGKVYFRSRLRGKG
Ga0168713_108041	Ga0168713_1080412	F089054	MLTKGKFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELNIYLRYPNQEINNNHLHSEHIRLQIREILQIPLTDITIIDIISLP
Ga0168713_110405	Ga0168713_1104053	F062845	MTTKWTEKGDSMKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNGVPSRACA
Ga0168713_110707	Ga0168713_1107073	F056682	MKMQSRAGKVANQPIERGKMYSASFGAFPSKNRITFPIQELGKIHNNQEVL
Ga0168713_118783	Ga0168713_1187832	F088921	LGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEMKKEKYINGEIYGEKNQIIVTNKSAMIRDKMWSK
Ga0168713_144036	Ga0168713_1440362	F074899	KQAVTSSFLDKKPPKSLVQQGLEGSTPVGKDEVGSSNLATRTK
Ga0168713_146386	Ga0168713_1463861	F087335	LLPENREEEQYAEAALNNILAGKTADTEICILPCFYDAPLHKGLLYHLNDGTTLRIRPVLNEAGEPELLIRCVTEETVEEMYQRVSNYDKEKEL