Sample 3300029240

Overview

Basic Information
IMG/M Taxon OID	3300029240 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127425 \| Gp0192942 \| Ga0168677
Sample Name	Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002660-47
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	190046318
Sequencing Scaffolds	17
Novel Protein Genes	17
Associated Families	15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Lachnoclostridium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:124	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal secretion

Location Information
Location	China: Beijing, Peking Union Medical College
Coordinates	Lat. (^o)	39.911947	Long. (^o)	116.4156125	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F029444	Metagenome	188	Y
F067720	Metagenome	125	Y
F068811	Metagenome	124	N
F068941	Metagenome	124	N
F074899	Metagenome / Metatranscriptome	119	N
F081354	Metagenome	114	Y
F087334	Metagenome	110	N
F087335	Metagenome	110	N
F087336	Metagenome	110	N
F090513	Metagenome	108	N
F090514	Metagenome	108	N
F090515	Metagenome	108	N
F101355	Metagenome	102	N
F105374	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F026489

Metagenome

197

F029444

Metagenome

188

F067720

Metagenome

125

F068811

Metagenome

124

F068941

Metagenome

124

F074899

Metagenome / Metatranscriptome

119

F081354

Metagenome

114

F087334

Metagenome

110

F087335

Metagenome

110

F087336

Metagenome

110

F090513

Metagenome

108

F090514

Metagenome

108

F090515

Metagenome

108

F101355

Metagenome

102

F105374

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0168677_100361	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	60706	Open in IMG/M
Ga0168677_100881	Not Available	32607	Open in IMG/M
Ga0168677_101115	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis	26739	Open in IMG/M
Ga0168677_101364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	22673	Open in IMG/M
Ga0168677_101404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	22037	Open in IMG/M
Ga0168677_101449	All Organisms → cellular organisms → Bacteria	21221	Open in IMG/M
Ga0168677_101525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	20179	Open in IMG/M
Ga0168677_101834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	16903	Open in IMG/M
Ga0168677_102939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Lachnoclostridium	10657	Open in IMG/M
Ga0168677_105699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	5236	Open in IMG/M
Ga0168677_108649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	3365	Open in IMG/M
Ga0168677_110534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	2710	Open in IMG/M
Ga0168677_112225	Not Available	2315	Open in IMG/M
Ga0168677_113908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2016	Open in IMG/M
Ga0168677_117245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1594	Open in IMG/M
Ga0168677_117650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:124	1556	Open in IMG/M
Ga0168677_142857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	563	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0168677_100361

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

60706

Open in IMG/M

Ga0168677_100881

Not Available

32607

Open in IMG/M

Ga0168677_101115

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis

26739

Open in IMG/M

Ga0168677_101364

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

22673

Open in IMG/M

Ga0168677_101404

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

22037

Open in IMG/M

Ga0168677_101449

All Organisms → cellular organisms → Bacteria

21221

Open in IMG/M

Ga0168677_101525

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

20179

Open in IMG/M

Ga0168677_101834

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

16903

Open in IMG/M

Ga0168677_102939

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Lachnoclostridium

10657

Open in IMG/M

Ga0168677_105699

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

5236

Open in IMG/M

Ga0168677_108649

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

3365

Open in IMG/M

Ga0168677_110534

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium

2710

Open in IMG/M

Ga0168677_112225

Not Available

2315

Open in IMG/M

Ga0168677_113908

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

2016

Open in IMG/M

Ga0168677_117245

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

1594

Open in IMG/M

Ga0168677_117650

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:124

1556

Open in IMG/M

Ga0168677_142857

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

563

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0168677_100361	Ga0168677_1003615	F067720	MASTTYRHLGDVTEMFAAQEQFRGITKMVCARFRDLTKTYHLGNAPVMVRNAGELPQPFWLGAACGGGSCSAAPCAART
Ga0168677_100881	Ga0168677_1008815	F067720	MASTTYEHFVDINKMYSAQEQFRDITKMVCARFRGLTKTYHIGNVNELVTVCHRFAVIGSMVRNAGQLPQPFQTCPEPPYAP
Ga0168677_101115	Ga0168677_1011159	F105374	MKKRVTLLVALCIWKVVAAQTPYGEMPERFRPDTLPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVANTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVARSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP
Ga0168677_101364	Ga0168677_10136412	F074899	MTEWKQRNKQAAISSFLDKKPPKSLVQQGLEGSTAVGKDEVGSSNLPSSSNKTL
Ga0168677_101404	Ga0168677_10140413	F029444	MEVSEQLTGFELEDLMSWTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGFDGPKKSAPFFNF
Ga0168677_101449	Ga0168677_10144912	F068941	MIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVIASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSFNLYATGKNATLNG
Ga0168677_101525	Ga0168677_1015253	F074899	MSGRKQWNKQAATSSFLDKKPPQSLVQQGLEGSTAVGKDEVGSSNLPSSSKKHRKLRFSVLFC
Ga0168677_101834	Ga0168677_1018344	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLCRAAALFKYREKHP
Ga0168677_102939	Ga0168677_1029399	F090515	VTTCCKAGPKAALRGTAPGRVACLEFAGGEKRKTNIAADYAVKALAFTALLCRHIGSI
Ga0168677_105699	Ga0168677_1056993	F087336	MHCLLRGMVAELEQVPKAFRAAGRQRRAAAKERIKDDAIGHSKVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKKSTLRGKLSKCSFRKQSAN
Ga0168677_108649	Ga0168677_1086493	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGTGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA
Ga0168677_110534	Ga0168677_1105343	F087335	MIELYFNDANLLPENREEEQYAEATLNNILAGKTADTEMCILPCFYDAPLHKGLLYHLNDGTTLRIRPILNEAGEPELLIRCVTEETVEGMYQRVANYD
Ga0168677_112225	Ga0168677_1122251	F090513	MEWKLLHIKHILYMQPFGALKIALQSVGNKNGTKAVLQGWAAAFVPYMLSFT
Ga0168677_113908	Ga0168677_1139082	F090514	MNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVLPRLTGVKWFVILLTIVPAGSRTRVGSSLPLSPASNIF
Ga0168677_117245	Ga0168677_1172452	F026489	MRSAGAEVVADGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF
Ga0168677_117650	Ga0168677_1176502	F081354	SALFERKKGRWSLVRENQQSSAHNFVKDFSPIFLKSSRRSPLKKGAATENPLEYGKTEVQILFEPLQAAISSMELPKNFENKKLPNPLR
Ga0168677_142857	Ga0168677_1428571	F068811	MDQDGSEHNICSNREGLCPGKKQHGAFGWKKIFQHGKEPLRNKDSVSQYCNKKVAVSLILNENVSETLCIFSIDKTNCCRIK

Scaffold ID

Protein ID

Family

Sequence

Ga0168677_100361

Ga0168677_1003615

F067720

MASTTYRHLGDVTEMFAAQEQFRGITKMVCARFRDLTKTYHLGNAPVMVRNAGELPQPFWLGAACGGGSCSAAPCAART

Ga0168677_100881

Ga0168677_1008815

F067720

MASTTYEHFVDINKMYSAQEQFRDITKMVCARFRGLTKTYHIGNVNELVTVCHRFAVIGSMVRNAGQLPQPFQTCPEPPYAP

Ga0168677_101115

Ga0168677_1011159

F105374

MKKRVTLLVALCIWKVVAAQTPYGEMPERFRPDTLPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVANTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVARSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP

Ga0168677_101364

Ga0168677_10136412

F074899

MTEWKQRNKQAAISSFLDKKPPKSLVQQGLEGSTAVGKDEVGSSNLPSSSNKTL

Ga0168677_101404

Ga0168677_10140413

F029444

MEVSEQLTGFELEDLMSWTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGFDGPKKSAPFFNF

Ga0168677_101449

Ga0168677_10144912

F068941

MIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVIASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSFNLYATGKNATLNG

Ga0168677_101525

Ga0168677_1015253

F074899

MSGRKQWNKQAATSSFLDKKPPQSLVQQGLEGSTAVGKDEVGSSNLPSSSKKHRKLRFSVLFC

Ga0168677_101834

Ga0168677_1018344

F087334

MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLCRAAALFKYREKHP

Ga0168677_102939

Ga0168677_1029399

F090515

VTTCCKAGPKAALRGTAPGRVACLEFAGGEKRKTNIAADYAVKALAFTALLCRHIGSI

Ga0168677_105699

Ga0168677_1056993

F087336

MHCLLRGMVAELEQVPKAFRAAGRQRRAAAKERIKDDAIGHSKVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKKSTLRGKLSKCSFRKQSAN

Ga0168677_108649

Ga0168677_1086493

F101355

MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGTGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA

Ga0168677_110534

Ga0168677_1105343

F087335

MIELYFNDANLLPENREEEQYAEATLNNILAGKTADTEMCILPCFYDAPLHKGLLYHLNDGTTLRIRPILNEAGEPELLIRCVTEETVEGMYQRVANYD

Ga0168677_112225

Ga0168677_1122251

F090513

MEWKLLHIKHILYMQPFGALKIALQSVGNKNGTKAVLQGWAAAFVPYMLSFT

Ga0168677_113908

Ga0168677_1139082

F090514

MNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVLPRLTGVKWFVILLTIVPAGSRTRVGSSLPLSPASNIF

Ga0168677_117245

Ga0168677_1172452

F026489

MRSAGAEVVADGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF

Ga0168677_117650

Ga0168677_1176502

F081354

SALFERKKGRWSLVRENQQSSAHNFVKDFSPIFLKSSRRSPLKKGAATENPLEYGKTEVQILFEPLQAAISSMELPKNFENKKLPNPLR

Ga0168677_142857

Ga0168677_1428571

F068811

MDQDGSEHNICSNREGLCPGKKQHGAFGWKKIFQHGKEPLRNKDSVSQYCNKKVAVSLILNENVSETLCIFSIDKTNCCRIK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029240: Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002660-47

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences