3300029233: Sewage sludge microbial communities from sewage treatment plant in Sweden - SWESTP59 - Uppsala-primary/surplus 201

Overview

Basic Information

• IMG/M Taxon OID: 3300029233
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127417 | Gp0192531 | Ga0168116
• Sample Name: Sewage sludge microbial communities from sewage treatment plant in Sweden - SWESTP59 - Uppsala-primary/surplus 201
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Gothenburg
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 102850524
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Sewage Microbial Communities From Wastewater Treatment Plant In Sweden
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Sludge → Sewage Microbial Communities From Wastewater Treatment Plant In Sweden

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Sweden
• Coordinates
  • Lat. (^o): 59.844519
  • Long. (^o): 17.659844
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006745	Metagenome	365	Y
F011177	Metagenome / Metatranscriptome	294	Y
F071395	Metagenome	122	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168116_1000140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	22616
Ga0168116_1001682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4623
Ga0168116_1052135	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	512

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168116_1000140	Ga0168116_100014022	F006745	MRTSQRDTRASSAVAVYVIVLVAFQVFLLTVAVEAFATDDEPLAWATAGVSLALAAGSAVLLRYLRP
Ga0168116_1001682	Ga0168116_10016822	F011177	MSQPEPLLPAEAARRLGVETRVIIQAMYEERLPRVRLADGTLGIPAEALESFDHA
Ga0168116_1052135	Ga0168116_10521352	F071395	TSGDVIDLTSYIKLYEFVPVGQKREVTVTTKEGMLNNKEEAIGRLISFSVKMISKDNYQIQLPEQLAAGEYGFVWVKNMELKEFTVFAFGIDWKSSD