3300029213: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011689-89

Overview

Basic Information

• IMG/M Taxon OID: 3300029213
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0192962 | Ga0168697
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011689-89
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 136773243
• Sequencing Scaffolds: 6
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044554	Metagenome	154	N
F044555	Metagenome / Metatranscriptome	154	N
F052660	Metagenome	142	N
F064817	Metagenome	128	N
F067720	Metagenome	125	Y
F078822	Metagenome	116	N
F101357	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168697_100217	Not Available	58161
Ga0168697_100335	Not Available	44007
Ga0168697_100359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	41959
Ga0168697_102072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	10765
Ga0168697_103419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	6703
Ga0168697_105528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3961

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168697_100217	Ga0168697_1002174	F032312	MARIKDYDEDLSAPKLLSERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMILLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0168697_100335	Ga0168697_10033524	F067720	MSSTTYDDFVDLNKIAQEHFRDVTKMVTKRHRFAAIGNMVRNAGQLPQPFWLGAACGGGSHSAARCAART
Ga0168697_100359	Ga0168697_1003599	F052660	MCILHILPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSCGRFLHGGILMGIALPIPSHRAKSHDFACWWPAAAGHSRSADALPGKSNS
Ga0168697_102072	Ga0168697_10207210	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLRANQYKLYPLLLDILKISLKDNFYDYSNASNIHYEGGKFPSMLTIQLFNLEF
Ga0168697_102072	Ga0168697_10207215	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYREYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV
Ga0168697_102072	Ga0168697_1020723	F044555	MKTTNPSSRITISQKGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLINELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0168697_103419	Ga0168697_1034193	F044554	VLAGRFIPVSCASIARLFPCRTEIARCFTLDFAISRYLFFSFPFSFRANFAQALFSSLLFVSDTRAKSILFLLFESEIAHLQGQYRFNSHRYCFSAFLVL
Ga0168697_105528	Ga0168697_1055282	F078822	LSSTFFDIFLNFPNAFLKAFHLHAVRFPAAFLLVHRFYLAFEELLSCATAYL