3300029212: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011687-108

Overview

Basic Information

• IMG/M Taxon OID: 3300029212
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0192960 | Ga0168695
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011687-108
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 134227407
• Sequencing Scaffolds: 16
• Novel Protein Genes: 19
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	10
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F032286	Metagenome / Metatranscriptome	180	Y
F032312	Metagenome / Metatranscriptome	180	N
F039147	Metagenome	164	N
F041208	Metagenome	160	N
F045105	Metagenome	153	N
F060985	Metagenome / Metatranscriptome	132	N
F070133	Metagenome	123	N
F072366	Metagenome	121	N
F075480	Metagenome	119	N
F077320	Metagenome	117	N
F078822	Metagenome	116	N
F080163	Metagenome	115	N
F082714	Metagenome	113	N
F082715	Metagenome / Metatranscriptome	113	N
F084124	Metagenome	112	Y
F088921	Metagenome	109	N
F090513	Metagenome	108	N
F101193	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168695_100080	Not Available	84851
Ga0168695_100283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	40010
Ga0168695_100318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	37046
Ga0168695_101212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	11817
Ga0168695_103038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5765
Ga0168695_103984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4672
Ga0168695_105582	Not Available	3612
Ga0168695_108867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2516
Ga0168695_109780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2323
Ga0168695_110366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2214
Ga0168695_110857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2128
Ga0168695_117432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1428
Ga0168695_119863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1279
Ga0168695_120298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1254
Ga0168695_130780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	865
Ga0168695_141201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	654

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168695_100080	Ga0168695_10008041	F032312	MPKIKDYDEDLSAPKLLSERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSYGNYKGSSMNFDAIVCLGFTWFKLLGVALMMLLWPIVFIYALHDGIEGYPFKKYAIPYIFILVVWFIIFLYGLVS
Ga0168695_100080	Ga0168695_10008042	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLRHSETPMGMCKIFDNQDHGFWHWVIKPWFQPERFGITNIWFLLEHGTYFCSNEYLLSNGKLHTIKGIQWVEIPLSLVFDNRVFDNRVFGYWFPPYKKYIPHRLRVLRLALKDLERIKEEYGKD
Ga0168695_100080	Ga0168695_10008045	F080163	MKTIKFLQESFETKEKFQQEISFKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVDEFKEKKTNFCNAKQFLESINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFNFTTSVLIQGFYNYSHRDLSFSTKLESQVLDSENELLQEKLDLIREEICELIGVDPNLEKQGHEDNYVFNLNIESDNQIGFFLQATEL
Ga0168695_100283	Ga0168695_10028330	F032286	MVKWVCQIVTPIRHRALVFNTRLFAGTAADDALVTGSTLSFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISPFSLALILTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENALKNADFHAHGQDRERAEV
Ga0168695_100318	Ga0168695_10031841	F084124	LLFGGLNKQAKAFARATKENTLHFHSQRNALTMFLAFLFIMAVACFNKLSFSKQTAWLFAPDKLLNRKILWALPKPAIFEKIE
Ga0168695_101212	Ga0168695_10121211	F090513	MEWKLLHITHILYMRPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFT
Ga0168695_102616	Ga0168695_1026165	F045105	MSDKLKRVLDTNLAGLHVTDAQVNAVLRRVSQDEKRPRVIRWQAIAAVLLVLVLGAGVLLQTGILSDDSPQLTADVTRQGDFLTAAQVKKLLASAADLQFSVDEEAISALMTQVEKDGGCSLSTLLEILCPAGSSLGQWDIRAQVALSQTLEKIGYQGILPGMTREPLSTEITAQDALARAVAYIRTNDDPQADFANLDFYRVGIRFLSGVYDGTCEGAYYCVNFDALDAFGTTYEVAVNAEDGSICRMRRERGAGSNHTADEVTRGFRRIFGYDMRTWTPMQLRVYILALSRADRSSMQTVHELFLSVGRDGFPDVPAEALTREEAIDAALAIQGGSSSDVLAAEYLAGASSDFWKIAIRQPNAPSGQSIVYLELNGLTGTLLTTTYSGNLYGLPQEFFPSQLLSTLDRTDFSHGVPAVDAETAQSAASAAIERQYQRNMAEEGYTCFIESDFEDTAGGFSYYTGGGVVIFTKDAQNTSQGDIYWAALNWYGEVLDVGWNRNPLDAARFTLLMQGFLPPKYCSDEVLQLQALLTGSQTDEAGLRQMETDGTLPLFNALLALEVVPDASTKSTADDVTAAALKSLNAHLCYENSSFLVYREDGELIWHFWLSTDMGYFLMDVRDSDLSVVGSVQIPSFSALRASILLPVRVWNTLAENLRVTIFYRDANTQPGIVYGMYANHIVQRYVDLYGANILRWDQATLRSFQSAISISGSYVGDWSVACLCQTIYPDVPDYAISQEVAAEYAARALGDDDYSLRGGVLIDPGEGDPIWKVTLDYPDGRSFNAEVDCRTGAIRTLRQQDTRVMPFYTDYLDFPDDGEYWFRNFVLDEVIEQVRTQMTGRYGNNV
Ga0168695_103038	Ga0168695_1030383	F070133	MKRLLGLLLAVMVMMGGMAGAQASTDNASMQLIRMNPLAFRKEPVGLYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGKFDPNGEQIPHGQIILKKNRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLMIYDWSFCACSDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELNGDFLQNENVRDAACIGQTAYMRIRLTNEKSEILLYDITQQKITDSQTLLAVDDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQADVTTIEMDEKSHFYFVCSYSISAGE
Ga0168695_103984	Ga0168695_1039843	F088921	LEAAKKIAVKTSALGATIRLYKIGARKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRDKSRSK
Ga0168695_105582	Ga0168695_1055821	F078822	NAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0168695_108867	Ga0168695_1088672	F101193	MARYNWTRCPHCGKLCKPSRFKAATVLVPTELVIFVVCIFFRNSMNDAIGWFAAWLLFVLLLFLPQYIYVRFFMPYETLSEDETRKFRDLQEH
Ga0168695_109780	Ga0168695_1097803	F082715	MMKFMKRSLSLLISAMLLLGCFALAEEAPLLPIAIVSYDLTDEATTATLSALIEPKENALTRWERVVLSDGREAWVICQFDQTTMSNAWSRVIDAETQEVLQEDTTDTGFFATAQARWESAKGIYALWSIQDKMLFDRLYAMAPCYGEPVEGDLTQEEALAAALNVTGLTAADYDAVGYGYIMGSSEQNGTWQVFFVKGSEVISTVNLDARDATILLVEPDEEGNG
Ga0168695_110366	Ga0168695_1103663	F077320	MKRKGMRRRRKLVLLAVLLIMVGIAVWRIWQTPRPTVLHRQDAWLSSAEPEMVDTLPDNAFTAELPEEIDGRLSYIRDYSASGHYQIVWEDVSAEAAESYLTALLDKGFTRLMGTAEDIASGVLLARGDLTLSISLSGGMLNMLMTRAEEPTATPLPEWLADW
Ga0168695_110857	Ga0168695_1108571	F039147	MTEMRKLGGGFYWVMSSDTMETAQESCEYSMSRVPNYRMPDLTHAISNLTSDGETLYALNRINGLIFKISETKDGLQTEDVCTMANLSCLNISYRDLETDKVYTYPASLTRMHVCGSVLAISVMQENGIKVVLVDLTDGAIREIAGESLEAMYEXXXXXXXXXWRLEGSTNEISRSSGTYTLSRYSVATGEETLLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEEPVVTFPAANVNIAVTKDSIVGVNLSSVYVRSKENGDMTVLRIQSSNGASNTALQHFAEENPEVILAQETLAKSAVNAASLAARMSASADAPDILRLGLTPDTPEADGSWPLDVLMDKGWCMDLSVYPEVSDYVSRLNGIYRDAVTRDGKIYALPIYAWSYGYFISRNVMEKLGLQESDIPTNLIDLCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVRDWIGYCQAENIPLRFDHPVFREMMAALDAMRTDKIEQANQQVNEEISDYRECLIWTDAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTTNADLVGKMLAQVIADQEATAKCVLLADYDEPIEDSYYLTMVNDYEKTLTELRRQQENAPVWKKQGIQERINEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFNALMSQVHQGEISLEEFVEEADKLIEGLE
Ga0168695_117432	Ga0168695_1174323	F029444	MEVSEQLTGFELEDLMSWTVSNLQRPFREDFSLEISGIIAEKESQIFGRRFVGFDGPKKAAPFFNF
Ga0168695_119863	Ga0168695_1198631	F041208	FSAKSEAVDWSAMRAEEGWYVTAYMRNTFVWLLMDEQGRVQAYDFDLLGNASLTYDGALPDNLDEAISSYIRRFADLNGFVEVADYAREEVTTFGDYAVAVTVQVTLDGTPYRFTMRLDMMAFTSVENANLHPTAAQTQRDILLLMRDNLAEKGVDITQTFFAVQADDADGETKLTGIASFPADAASDAIREQYGELERYTLHYSGRASEAGIERVELSDWQETTATAQFPLALYALVDGKYLVPDGELAAGTAYLALDSMGLRGRNVIPLESITMLTRIRYARADGTFAESWVSSDTLTENDAAPAAPKREPIPTLESYQITLSGTAYTAFAINKVEKGYDAFADIAGTQTAVVDVLTSAAQGVIAEYGVDASDLLCRTVVEYGYRADKGCWQVDFTIPQRDMADDAYEVEVDDKDGKVTGLWG
Ga0168695_120298	Ga0168695_1202981	F075480	EESRHVAFPRRAMVLAAALVLVLTTAYAAVVTHTELVWNAGHPIENEADDRLGLLTGKAGTSGDNLTIGGVTFTVQDGIYSPETGQLFASAVISADESVQLVAVEADMEHEVRLTTPVDAKLDPSGISWAEWAEQNGKTLVPIGMEAAPTLQFLKVNGQTTDTPLIGAFLTQNPDGTVSAGFQVDLSEADVSHLKSCEVQLECRVGAFGKDGKATQWQKEILTATITFK
Ga0168695_130780	Ga0168695_1307802	F082714	MVVGIRFAADAPVRTVLQAVLPIFPTADVDFLVREYWVCTFGNGLPERRFTAQEMRRALDALTPDEHAELFTIYVLPHNAPGTPPSSCEDFCARGFTMAFYAYDGDGYALLAQSEEQVEAVIKTLRKAVEIRSVEAVERETLG
Ga0168695_141201	Ga0168695_1412011	F072366	MLDILAIKADVYQLERQGKRLTVYRYLREVWQKEPPSEGLTVLALQQMVDYVEYVDDLTVLGEPWEAENEYDLYQDFLLDVISWGLQKYRTKKRFLWQICYYVNAWATFYYIFGREITQDNVEQWKKTLFEEAKERYPDSLLFEFIPHAAQLDYVWFYRLTDEQRLQIRLEV