NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300029210

3300029210: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021221-45



Overview

Basic Information
IMG/M Taxon OID3300029210 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0127425 | Gp0193091 | Ga0168823
Sample NameHuman fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021221-45
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size142318642
Sequencing Scaffolds22
Novel Protein Genes32
Associated Families29

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
Not Available4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHost-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationChina: Beijing, Peking Union Medical College
CoordinatesLat. (o)39.911947Long. (o)116.4156125Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032286Metagenome / Metatranscriptome180Y
F032312Metagenome / Metatranscriptome180N
F042095Metagenome159N
F044555Metagenome / Metatranscriptome154N
F056682Metagenome137Y
F057001Metagenome137Y
F059106Metagenome134N
F060985Metagenome / Metatranscriptome132N
F062845Metagenome130N
F064817Metagenome128N
F068811Metagenome124N
F074964Metagenome119N
F075481Metagenome119N
F076653Metagenome118N
F077313Metagenome117N
F078005Metagenome117N
F080673Metagenome115N
F083452Metagenome113N
F084124Metagenome112Y
F089590Metagenome109N
F089591Metagenome109N
F090484Metagenome108N
F093883Metagenome106N
F097493Metagenome104Y
F098313Metagenome104N
F099406Metagenome103N
F101357Metagenome / Metatranscriptome102N
F102167Metagenome102N
F106193Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0168823_100009All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae328953Open in IMG/M
Ga0168823_100073All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales149464Open in IMG/M
Ga0168823_100100All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii130048Open in IMG/M
Ga0168823_100209Not Available84198Open in IMG/M
Ga0168823_100236All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii78729Open in IMG/M
Ga0168823_100253All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii75737Open in IMG/M
Ga0168823_100486All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques44524Open in IMG/M
Ga0168823_100676All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales32459Open in IMG/M
Ga0168823_100913All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales23076Open in IMG/M
Ga0168823_101478All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales13045Open in IMG/M
Ga0168823_101541All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes12365Open in IMG/M
Ga0168823_101935Not Available9506Open in IMG/M
Ga0168823_101991Not Available9142Open in IMG/M
Ga0168823_102283All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium7969Open in IMG/M
Ga0168823_102448All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales7449Open in IMG/M
Ga0168823_102998All Organisms → cellular organisms → Bacteria5982Open in IMG/M
Ga0168823_103585All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes4971Open in IMG/M
Ga0168823_103844All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium4655Open in IMG/M
Ga0168823_107435All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium2534Open in IMG/M
Ga0168823_108554Not Available2253Open in IMG/M
Ga0168823_109421All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium2076Open in IMG/M
Ga0168823_121426All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium970Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0168823_100009Ga0168823_1000092F059106MHASVWKIRVILLQKFVWIVDLKVREHLTEYLKKDIKYHRVTTEVHV
Ga0168823_100073Ga0168823_100073135F074964MITKKNVNKLQNAVIKENAANLVGAVKLYNALFANGADLKVICKALEIPVEYAIKVAALAKDKKQLVAVCSQMLPKVGDTFVKFALYSKVYKDNKVDKEKGIETKTADWCAENVIYGGEYKPFGFSTAETLETKKSAKWLVKETDEYKATYVAVRIKSYSIRTIAKCVSEYLTHESNQQ
Ga0168823_100073Ga0168823_100073160F090484MDIPKNPSDFFLLQIMKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSAWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKSGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNHNTTVGNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL
Ga0168823_100073Ga0168823_100073179F099406MAEVGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSSYLDLSIFPSTSGTLDEDSFGKVLDAYNNKITLGKLAGNYYSLDYFLSGKDLGGVFELKIVFVSFSDTNTGEGTSESDIEIQVGTYTVTQDKAYKVLSNMVTLSNTMMSYLRFMSKAPRVVTTLVNLPKDTHNIIANVASATSLSMTVSAEDVGREWQVRVNNTTGNDITQPLPTSGQFQSMSGDSVIVPKNSFIELSIWYINDKLVIRVGEQA
Ga0168823_100073Ga0168823_10007324F098313MKEKEFDFVIYPLKLIITVGLDYKTLCDRFENAELDHEGEWGDEGDLDSKASFLNLVRDKGDDRAFKLLWNFQSENKMTMRNICHESFHAAMSVCQHCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEEEKDGKEN
Ga0168823_100100Ga0168823_10010033F062845MKKTPFTLHEKFRSDNNEQRKERFQKEFERYIIDGLLNGVPSRACA
Ga0168823_100209Ga0168823_100209101F032312MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVVWFIVFLYGLVS
Ga0168823_100209Ga0168823_100209102F060985MRIFENYEKVKHEIIKAIDFLRHSETPMGMCKIFDNQNHGFWHSVIKPWFKPERFGITHLWFTSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPPYKKYIPHRLRVLRLALKDLDRIKEILDILL
Ga0168823_100209Ga0168823_100209107F044555MKTTNPSSRITISQNGNQILTCKVYKELNYILSMSNEEILELISGLDYIGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0168823_100209Ga0168823_1002092F101357MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLRANQYKLYPLLLDILKISLKDDYYNYSNTSNIHYEGGKFPSMLTIQLFNLKF
Ga0168823_100209Ga0168823_1002097F064817MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHKVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV
Ga0168823_100236Ga0168823_1002368F084124VWAKPTNTFHLCNLTIAKQAKAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLYLKIFMGAAQTRNF
Ga0168823_100253Ga0168823_10025317F068811MDKMDQDGSEHNICSNREGLCPGKKQHGASGRKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI
Ga0168823_100486Ga0168823_10048645F059106MHASVWKIRVILLQKFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV
Ga0168823_100676Ga0168823_1006763F032286MVKWVCQTVTSVRHRALVFNTWLFAGNAADDTLVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISLFSLALIFIFDFAALSERRSCPEDRSRRFVPVGTLTLSRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQNRKRAEI
Ga0168823_100913Ga0168823_10091322F097493MYKFYSKNGQAQFYEHGVEIDGTVYGIHADRDILRIKRRIVNDKFAETDGDFDMDTEIAKIQHTDVTFEQPTAEQLEQIQAKTYNSMTELKQHVQSIMNGELTQDEINAMLMLQIAELKAGVDSE
Ga0168823_101478Ga0168823_1014785F056682MKMQSRAGKVANQSVGQSEMYPASFWAFPSKNRSTFPIQKLGKIYKNQEVL
Ga0168823_101541Ga0168823_1015411F042095MAKTLYKYEASSNKFMWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTAFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDLRNIGQRMTVIPEAITSKTEVYYLSMFNMLDLRDIESSGIRNIKNMKSLQTLELSSCYLDRYIKEFNDLPKLTSLRIHPGPSDMWNYFDINTLPFFEVDKINPNITNFDFLNDWVSGERRTGWNDDNMSGRGLDHLTGFFVYHSNSIRVDKLPDYIYEMRSITRFVMDYSTHSQKRSDDFVNSFYDLVVGWDQITMASVAKDGERNQFYGLAVSIYGSQYPDENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE
Ga0168823_101935Ga0168823_1019356F093883MRNMEDKDIKTEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKGIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDIKANATGKTKADE
Ga0168823_101991Ga0168823_1019912F077313LDTPDQLRTKYANAFDQDDVFPASFKGSLQRIAENYQDNGITLNNITVNDVDKSKTGSGETDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANVVGTVMSGIGGVLGLARNIFSGIASEQGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVEQPGEAPMEAMGQKHADGGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGINTDERLNYYKTFNPVAYDAYMGASEGARARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEEPDVKLDMPELIDPNTLPKTNTNAGKSNSGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGRYINEVEQGNVAQRTWADNVNSQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNDQLIADPQGDILSYRILYPAQEVTKGKKG
Ga0168823_102283Ga0168823_1022836F078005MKKSEFVKKLEKIIDMVKTEDDGFEYGGKVIFYKEDDSNYEVSVMNIEMNLEVEANVMAGMDDMDFTCLMSEVYKQKAVKAIMMEKDDDEDN
Ga0168823_102448Ga0168823_1024481F098313MREQKFDFVIYPLKLIITVGLDYETLCNRFENMEPDHKGEWGDKDDMDKEASFVNLVRDRDDDGKFAILWNFSSDDDIMMRNICHESFHIAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGDCVSEFINNK
Ga0168823_102998Ga0168823_1029984F106193VGCNTCKEKALRAERERIERSMMNHSSSTVVSDMEYASRSTAGCMVMQDPLQTMERDVVSIYKQVRTKGDGVGVSYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRAEHIKP
Ga0168823_103585Ga0168823_1035853F097493MYKFYSKNGTAQFYERGVEIDGTVYGIRTDSDILRIKRSVLNSKFAESEEDFDMNVEIAKIQHTDITFEQPTAEQLSQIQAKKFDSMSDMKQHVQSVMSGDETMSQDEINAMLMLQIAELKAGVDGE
Ga0168823_103844Ga0168823_10384410F102167MDINQIKTYLPSGWDVVDLIDHGIIDLDIMNGKMMGEYMAVLMIKSYDKITESHNLTTFSFHDKDMGGLRRLVSNAIMAVGLRNNPLTGDGNTAIK
Ga0168823_103844Ga0168823_1038447F083452MSGRVKIKIKDKKPKIDVFKVIESRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLLDKYVRK
Ga0168823_107435Ga0168823_1074353F057001MTNKELNKVQNEVKKASEKTLTGAVKAWCQLFKSGKEINEILKENEIKVDKAIVPALVNLAKDKEVVIQLCKEILPRVNNTFCAYKEVDREYYDKNEQDKNKKLKMSEIEDIAILGSSHKRFGYNEPIEYDFGIYYETFNGADKRIIKCAVPIKRYTFNLIAKCVTYYLTHPKNDR
Ga0168823_108554Ga0168823_1085542F075481MIRLRISLKAVFCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGRRDSTVTADSVGIDKTITGIEDIDKKTDIEHKDVDDKKESRWPIAITSISVLLILLGLIYLLKKMKVL
Ga0168823_108554Ga0168823_1085543F089590MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSIRGWKIRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFADAYLVKVFKAVFKRINVFKMFGFSKNIPDEMFDDIKKIADDKVKDKS
Ga0168823_109421Ga0168823_1094211F080673MELQDEALLYLRDNITREEAYYILTTDKEMLAILIADKKDGSKRIKILDAEYTIEKDDMLFLFDTDGVIDECLLVASYIGVNMYFRRQDVNAILNNINREKVMKYPYIAIQLDNIQTVEKRRVVFEITGHRMDDNKERIDFMFIYFMARLCV
Ga0168823_121426Ga0168823_1214261F076653DGTINIAELLQYLWINNKVYGCEYAPIDISSALQTLIRLTENAKHMFEDQPGVYDMIPYRGFFLRDDFSSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDSFLGKKYRKNLRTFIYRGIVFFLDRIWHTPLFERMGVKMKYNAYYCYAATSGIWYDNGFKRRLAKRFNRSLSGGGELFGANLACMVCDRKDIDWEALRLWLEKYDDPTDNGMVNSPIQFMY
Ga0168823_129130Ga0168823_1291301F089591DRLVKYYLNRKDDETIRSIQNLLVYWMSLDNAGRMDDPESTSFNLPDDYLWFSNIKGVFSYKGCEAADFVMWEAKNENIHELLGDENNRPSYDYRETFYSIGNGKVVVYESGFRTEEVKMTYYRRPVRVDLSGYINAAGIQSTDIDPELPDYLVEEILNMVTKQFNLNENELYRYRMDKDNVASFK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.