3300029206: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021280-21

Overview

Basic Information

• IMG/M Taxon OID: 3300029206
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0193121 | Ga0167480
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021280-21
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 143384000
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F062845	Metagenome	130	N
F076189	Metagenome	118	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0167480_101171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	19419
Ga0167480_101213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	18662
Ga0167480_104821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3906

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0167480_101171	Ga0167480_1011717	F076189	MPGRLCYLPGIAFFLFPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAYFDLCAIQSAQKQLRMLCNFHENTFWLLIFYANYAIL
Ga0167480_101213	Ga0167480_1012132	F032286	MVKWVCQIVAPVRHRALVFDTRLSAGNTADDTLVTGGTFRFCRLMCPCVKRRNVKPDSKHRSLPDSALFRADNRTGRKTISPFSLALILTFDFAALSERRSCPEVRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKTQISTLMDRIGQIRNEGRIACG
Ga0167480_104821	Ga0167480_1048212	F062845	MKKTPFILHEKFRSDNNEQRKEDFQKEFERYIIDGLLNAVPSRSCA