3300029197: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021231-89

Overview

Basic Information

• IMG/M Taxon OID: 3300029197
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0193101 | Ga0167473
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021231-89
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 110380476
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F026489	Metagenome	197	N
F039198	Metagenome	164	Y
F081354	Metagenome	114	Y
F082887	Metagenome / Metatranscriptome	113	Y
F090514	Metagenome	108	N
F090515	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0167473_100015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	184728
Ga0167473_100133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	71546
Ga0167473_100163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	64422
Ga0167473_100453	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	33187
Ga0167473_106353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2634
Ga0167473_121347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	803
Ga0167473_133412	Not Available	517

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0167473_100015	Ga0167473_100015170	F082887	MEKIKKIAKYATNILAIVSALVAGINAVEGITIPYAIQIVQIIAVVQGVIGTYLLGQKAITEKEEK
Ga0167473_100133	Ga0167473_10013340	F026489	LTPKENQKSASDFDALEPRKRGYSPLLTPKKWATPEKTEDSRLFGVKIF
Ga0167473_100163	Ga0167473_1001635	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADISPRLTGAKWFVILLTIVPAGSRTRAGSSLPLIPASNIF
Ga0167473_100453	Ga0167473_10045316	F013656	MKKIYKEAIKSEIETNINVLYSENKIVIYTNKVSLQKQLNKLIGEPTKEYKIKRSIAGSLWEIPLEDKTRIQKLIVKANIFEL
Ga0167473_106353	Ga0167473_1063532	F039198	MQITNTEIQGMKYVQIYLTEDELQKKETKDLVKKYKQEKYSVAIFVSGKENYPEILEKIITKQVELNRNVC
Ga0167473_121347	Ga0167473_1213472	F081354	VPFLSAKKALDLVRENQQSSAHNFVKDFSSIFLKSRRRSPLKKGAGCKNPLENGKAEVQILFDPLQATISSMELPKNFENKKLPNPLR
Ga0167473_133412	Ga0167473_1334121	F090515	LQGTAPGRVACLEFAGGEKRKTNIAADYAVKIPAFTALLCRHIGSIRTFLKS