3300029196: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021317-140

Overview

Basic Information

• IMG/M Taxon OID: 3300029196
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0193158 | Ga0167505
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021317-140
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 104870283
• Sequencing Scaffolds: 8
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F032312	Metagenome / Metatranscriptome	180	N
F064817	Metagenome	128	N
F067720	Metagenome	125	Y
F067845	Metagenome	125	N
F078822	Metagenome	116	N
F080163	Metagenome	115	N
F087335	Metagenome	110	N
F088914	Metagenome	109	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0167505_102483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	7045
Ga0167505_102754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6335
Ga0167505_102924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5906
Ga0167505_104158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4164
Ga0167505_104399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3943
Ga0167505_105352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	3205
Ga0167505_107075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	2355
Ga0167505_107209	All Organisms → cellular organisms → Bacteria	2305

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0167505_102483	Ga0167505_1024838	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKPFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIRNPGEFIVFSAWYAAKALEMDVK
Ga0167505_102754	Ga0167505_1027547	F078822	FDIFLSFPNAFSKAFHLHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0167505_102924	Ga0167505_1029244	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVVHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMSHTDDLNVFLYWSGCYGVPDDVTVALLLDDSAAMTAWLYAPQADSAAAKLLDDAAGHNEMGAAFIDYNGTAYVVAVFR
Ga0167505_104158	Ga0167505_1041584	F026489	NQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF
Ga0167505_104399	Ga0167505_1043996	F067720	MTSTTYHHIGDVTGMFAAQEQFRHVTKMVCGRFCDLTKTYHLGAVTVMVRNAGQLPQPFWLGAACGGGSHSLSASVARA
Ga0167505_105352	Ga0167505_1053522	F105375	MKNNETFQTTQPLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0167505_105352	Ga0167505_1053524	F064817	MNIKNLFNRFCKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYLRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV
Ga0167505_107075	Ga0167505_1070753	F087335	MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIKPTLNEVGEPELLNRCVTEETVEEVYQRVSNYDFDEPCAGKVPS
Ga0167505_107209	Ga0167505_1072092	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDAMVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVVWFIIFLYGLVS
Ga0167505_107209	Ga0167505_1072095	F080163	MKTIKFLQKSFETKERFQQEISFKYSYNRNTVESIDFRINQRNIKYFYEAMENFENSLVDEFKEKKNNLCNAKQFLESINDFDKIILVIITYMKTYFDSCKDYSKISLHIHLVQFDFTTSVLIQGFYNSSYRDLSFSTKLENKVLNSEIELLQEKLNLIKEEICELIGVDPNLEKQGHEDNYVFNLNIESDNQIGFFLQETEL