3300029186: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021587-57

Overview

Basic Information

• IMG/M Taxon OID: 3300029186
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0193162 | Ga0167509
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021587-57
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 91364404
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia wexlerae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059106	Metagenome	134	N
F084124	Metagenome	112	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0167509_100783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	23806
Ga0167509_100830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia wexlerae	22198
Ga0167509_103309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	2937

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0167509_100783	Ga0167509_1007837	F084124	LNITALAFARATKENTLPLHGQRNELTVFLAFPVTMAIACFNKLSFNTQTTTLFAPEELLYRMIFMGAAQTRKPLKRLDLNFLII
Ga0167509_100830	Ga0167509_10083016	F059106	ILLQTFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV
Ga0167509_103309	Ga0167509_1033094	F084124	VWAKPTNTFHLCNLTIAKQAKAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPKKLLYRKILWALPKPAIFEKIE