3300029181: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021318-142

Overview

Basic Information

• IMG/M Taxon OID: 3300029181
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0193159 | Ga0167506
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021318-142
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 76309728
• Sequencing Scaffolds: 9
• Novel Protein Genes: 15
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	2
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F055775	Metagenome	138	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F067720	Metagenome	125	Y
F080163	Metagenome	115	N
F084124	Metagenome	112	Y
F090514	Metagenome	108	N
F090515	Metagenome	108	N
F101357	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0167506_100008	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	170281
Ga0167506_100023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	129122
Ga0167506_100095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	70230
Ga0167506_100224	Not Available	42124
Ga0167506_100842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	13023
Ga0167506_100848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12932
Ga0167506_101724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	6101
Ga0167506_102561	All Organisms → Viruses → Predicted Viral	4123
Ga0167506_109593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1262

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0167506_100008	Ga0167506_100008170	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDAIVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVVWFIIFLYGLVS
Ga0167506_100008	Ga0167506_100008171	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLRHSETPMGMCKIFDNQDHGFWHWVIKPWFQPERFGITNIWFLLEHGTYFCSNEYLLSNGKLHTIKGIQWVEIPLSLVFDNRVFGYWFPPYKKYIPYRLRVLRLALKDLERIKEEYGKD
Ga0167506_100008	Ga0167506_100008173	F080163	MKTIKFLQESFETKERFQQEISFKYSYNRDTVESVNFRINQRNIKDFYEAMQNFENSLVDEFKEKKNNFCSANQFLESISDFDKIIFVIITYMKSYFDFCKDYSKISLHIHLVQFDFTTSVLIQGFYNYSHRDLSFSTKLESYVSNSEIELLQEKLDLIREEICKIMGIDPDLQKKGHEENYIFNLNIDSDNQIGFFLQATEL
Ga0167506_100008	Ga0167506_100008176	F044555	MKTTNPSSRITLSQNGNQILSCKVYKEPNYILSMSNEEILELISGLDYMGNIPTVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQNILQNPEDLVSLSQHHKR
Ga0167506_100008	Ga0167506_100008184	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLRANQYKLYPLLLDILKISLKDAYYNYSNTSNIHYEGGKFPSMLTIQVFNLEF
Ga0167506_100008	Ga0167506_100008189	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNYSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0167506_100023	Ga0167506_10002343	F084124	LLFGDLNKQAKAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNILSFSTQTAWLFAPDKLLYRKIFMGAAQTRNF
Ga0167506_100095	Ga0167506_10009542	F084124	LNATANAFARATKGNKHHFHSQRNAVTIFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLYLKILWALPKPAIFKKIE
Ga0167506_100095	Ga0167506_10009558	F084124	LNITALAFARATKENTLPFHGQRNELTVFLAFPVTMAIACFNHLSFSTQTTTLFAPEELLFMGAAQTRKPLKRLDLNFLII
Ga0167506_100224	Ga0167506_10022457	F067720	MASTTYRHLGDVTEMYAAQEQFRDITKMVTKRHHFAVLGNMVRNAGQLPQPFWLGAACGGGSCSAAHCAERT
Ga0167506_100842	Ga0167506_1008422	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVLPRLTGVKWFVILLTIVPAGSRTRAGSSLPLIPASNIFLKQTPRRGLPLAWNAGAGSFLFCG
Ga0167506_100848	Ga0167506_10084817	F067720	MASTTYRHLGDATGMYAAQEQFRDITKMVCDFVGLNKIDHFAVIVNMVRNAGQLPQPFWLGAACGGGSCSAARCAART
Ga0167506_101724	Ga0167506_1017242	F090515	VTTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVSAFTALLCRHIGSIRTFLKS
Ga0167506_102561	Ga0167506_1025614	F055775	MAQIAQQDNLVIEVTTTAAALDGDTKKKLIECIEGGTIADVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIIDANSGTVVTIELN
Ga0167506_109593	Ga0167506_1095932	F032286	DALVTGSTLSFCRLVCLCVKRRNVKPDSKRRSLPDSALFHADNRTERKTILLFSLTLIFTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRKGQKIGGRTPLCSQNSPFRNGSKTCA