3300029179: Aquariaum water viral communities from Chicago, USA - Amazon Rising - AZ2

Overview

Basic Information

• IMG/M Taxon OID: 3300029179
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127413 | Gp0192416 | Ga0168030
• Sample Name: Aquariaum water viral communities from Chicago, USA - Amazon Rising - AZ2
• Sequencing Status: Permanent Draft
• Sequencing Center: Michigan State University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 32559669
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Anabaena → unclassified Anabaena → Anabaena sp. CRKS33	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquariaum Water Viral Communities From Chicago, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Aquaculture → Unclassified → Unclassified → Aquarium Water → Aquariaum Water Viral Communities From Chicago, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): na → na → na

Location Information

• Location: USA: Chicago
• Coordinates
  • Lat. (^o): 41.87
  • Long. (^o): -87.61
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009598	Metagenome / Metatranscriptome	315	Y
F028485	Metagenome / Metatranscriptome	191	Y
F042051	Metagenome / Metatranscriptome	159	Y
F042224	Metagenome	158	Y
F045705	Metagenome / Metatranscriptome	152	Y
F074743	Metagenome / Metatranscriptome	119	Y
F085609	Metagenome	111	Y
F104784	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168030_100109	All Organisms → cellular organisms → Bacteria	11767
Ga0168030_101219	Not Available	2918
Ga0168030_104827	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1191
Ga0168030_105202	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1144
Ga0168030_106182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1047
Ga0168030_106659	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1010
Ga0168030_114745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Anabaena → unclassified Anabaena → Anabaena sp. CRKS33	647
Ga0168030_115063	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	634

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168030_100109	Ga0168030_10010931	F042224	MTKLLIIYRLFDSNYGKQGNPKTLSVYLREDKTLGYSYYGGWQDSGMGYAIGNMQLKKSLPMGSRNFKTTKKLHNEIVSVLKTGVGSHEISSFEILNEL
Ga0168030_101219	Ga0168030_1012193	F045705	MEIDVTQLQMGDEFLYSVQGTIARAKVIRPVEAKKVQPPYRLNNKVYYKSVKCKVAMIEVSYSNNWNGTTRTWTRNEYCASDNYTVEKFLNLNHRNIWLLKKED
Ga0168030_104827	Ga0168030_1048273	F085609	MKSDEQIVGEACRVEVEESTGRVFIVFEIKNEKYKQDIMKSWTKDIEFKLVDKNLVAND
Ga0168030_105202	Ga0168030_1052022	F042051	MTTFGEVSWNDDLEGFNNKKTNSKDLFLKLDEGSNEVRLITQPFQYLVHKYKKDESDKYGQKVSCSAVHGSCPLCAMGDKAKPRWLLGVISRKTGTYKILDISFAVFSQVRKLARNTQRWGDPTKYDIDIVVDKQGGATGYYSVQPVSKEPLSAEDQKIKDNADLDDLKRRVTPPAPEFVQARLDKINGVQGAGRPNAAATAPAKPSTP
Ga0168030_106182	Ga0168030_1061821	F074743	MIDLSNKVKRDRLLKAIKSSRAAMEPFRRVRKSLIESYVGSWYTPENPQPKTLVNLINQTARIYTVALAANNPKVLVTTPHVQNYPFARRFEVNLNKLISDMALDQTFRSIVLDAFFCLGCGVVMMRDTDTRFHGLLEAEEDVWLDPGEPWLNRVSFDDLILDMPAKELSKMRYCGHRYRADYEKVMDEPGYDKKVKEKLRPVTRSFHDSVDAARDLASEYGGAEDDDMKDMIWLMDLWIAENNSI
Ga0168030_106659	Ga0168030_1066592	F028485	FPVTIKAYYQKTFPFLFSPTADPLIPVVQNNGVLASFPEGYLYGTLQCYYDKNKNVEEAQKWQVRFDDAYGLIEDQNYRGRWRGGDQHLTSEFQPRDYRYSFK
Ga0168030_114745	Ga0168030_1147451	F104784	MIPINKSAYLTVRVSDKTRTKFHAKVRKFGTPSEVLRELVDAFIEDRVTIQPPVTGNPKEKLYVPRSKNDRDWE
Ga0168030_115063	Ga0168030_1150631	F009598	MLDKQNVVVENLESLGGAKGLTEQVAHEVYLKMVDYLRLTQAKNTYNRLNDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEADDTQSRQATEMVKYMLNSKNDSYQIIRDWAQDALLHKNGIVMISPVRNPITQYKEVEGTKDQLRVFETLAAEKGLTAKRQNMRRVDVDLQGVI