3300029147: Estuary sediment microbial communities from University of Hong Kong - Estuary Sediment

Overview

Basic Information

• IMG/M Taxon OID: 3300029147
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118575 | Gp0137467 | Ga0120079
• Sample Name: Estuary sediment microbial communities from University of Hong Kong - Estuary Sediment
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hong Kong
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 4702194
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Environmental Microbial Communities From Various Locations To Study Antibiotic Resistance - The University Of Hong Kong
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Estuary Sediment → Environmental Microbial Communities From Various Locations To Study Antibiotic Resistance - The University Of Hong Kong

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): estuarine biome → estuary → sediment
• Earth Microbiome Project Ontology (EMPO): na → na → na

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000918	Metagenome / Metatranscriptome	834	Y
F016968	Metagenome / Metatranscriptome	243	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0120079_100027	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1368
Ga0120079_101080	All Organisms → cellular organisms → Bacteria	528

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0120079_100027	Ga0120079_1000271	F016968	SKALIALVGLVCITILLGLNRIPTEAGTGMIGTILGYAVGNGIAAKQGKEVSPIIGAKK
Ga0120079_101080	Ga0120079_1010802	F000918	MYKTNQQAWKEVMQSFKEDERQTAICQKMYGQDNLIGLTEEQKQAFWKAI