3300029138: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012072-43

Overview

Basic Information

• IMG/M Taxon OID: 3300029138
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0192993 | Ga0168728
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012072-43
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 76105084
• Sequencing Scaffolds: 4
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F057001	Metagenome	137	Y
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F067720	Metagenome	125	Y
F094005	Metagenome / Metatranscriptome	106	N
F106193	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168728_100126	Not Available	66138
Ga0168728_105825	Not Available	1715
Ga0168728_112512	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	959
Ga0168728_123962	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	554

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168728_100126	Ga0168728_1001262	F044555	MKTTNPLSRITISQKGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLGKPIEIQVSTTRPIPLEQNKEVQTKIKEIIYNNLYDTLIDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKRR
Ga0168728_100126	Ga0168728_10012686	F094005	MKKEIVKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDEETLEKVITLDKKLKKLIEKLNE
Ga0168728_100126	Ga0168728_10012687	F032312	MPKIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDNHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIERYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0168728_100126	Ga0168728_10012688	F060985	MSNIDEKAKNNLTIEMRIFENYEKVKHEIIKAIDFLRHAETNLGMCRIFDNQNHEFWHSVIKPWFQPERFGITHLWFTSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPPYKKYIPHRLRVLRLALKDLERIKEEYGKD
Ga0168728_100126	Ga0168728_1001269	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV
Ga0168728_105825	Ga0168728_1058253	F067720	MSSTTYDHFAITGKMYATQEHFRRITKMVCGRFREVAKTSHLGNANKLVTFCHQFAVLGNMVRNAGQLPQPFWLGAARGGGSRSAARYAART
Ga0168728_112512	Ga0168728_1125121	F057001	KYWCQLFKSGKEINEILKDNDIKVDKAIVPALVALAKEKETVIQLCKEILPRVNDTFCAYKEIEREYYDKQDQANNSKLPLDKVNSIAVLGNTHKRFGYCEPVAYSDTNSVPYYEVFNGSDKRIVKVATPIKRYTYNLIAKCITYYLTHPKNDR
Ga0168728_123962	Ga0168728_1239621	F106193	VGCNTCKEKALRAERERIERSMMNHSSSTAVSDMEYASRSTAGCMVMQDPLQTMERDVVSIYKQVRTKGDGVGVSYLNMQKKIREWIKNLP