3300029132: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019854-111

Overview

Basic Information

• IMG/M Taxon OID: 3300029132
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0193061 | Ga0168796
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019854-111
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 171398055
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F042936	Metagenome	157	N
F047126	Metagenome	150	N
F055715	Metagenome	138	N
F056682	Metagenome	137	Y
F067844	Metagenome	125	N
F067845	Metagenome	125	N
F068811	Metagenome	124	N
F076064	Metagenome	118	N
F078822	Metagenome	116	N
F087335	Metagenome	110	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168796_100177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	105738
Ga0168796_100783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	32329
Ga0168796_100817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	31082
Ga0168796_100979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	25785
Ga0168796_101195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	21061
Ga0168796_101200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	21000
Ga0168796_101506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	16777
Ga0168796_102669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	9001
Ga0168796_119522	All Organisms → cellular organisms → Bacteria	1198
Ga0168796_123652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	993
Ga0168796_137169	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	630

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168796_100177	Ga0168796_100177103	F067844	MNTLAAETASAWYLILNRKLQTLPIYKTQLSSHLPRPLTMGTQQVSAGAAVITPQHRSYRVPQGSPQVFGGP
Ga0168796_100783	Ga0168796_10078328	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAYAPELDNTAKAVAEWFIQEPDSLRVSGLDLVYTVALDADSNMGYTDNLNHFLFWSGCYGVPDDVTVALLLDDSAAMTAWLYAPQADSAAAKLLEDAVGHNEMGAAFIDYNGTAYVVAVFR
Ga0168796_100817	Ga0168796_10081725	F026489	MRSAGKVLLAEGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKGWAIPEKTEDSRLFGVKIF
Ga0168796_100979	Ga0168796_1009795	F042936	MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPCLGKVYFRSRLRGK
Ga0168796_101195	Ga0168796_10119517	F078822	LSSTFFDIFLSFPNTFLKAFHPHAIRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0168796_101200	Ga0168796_1012007	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPSGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAHILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0168796_101506	Ga0168796_1015065	F087335	MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIEPFLNKEGEPELLIGCVTEETVGEVYQWVSNYD
Ga0168796_102669	Ga0168796_1026698	F056682	MAEKPHESETVKTQSRAGKVVNQLIGQGEMYSASFMAFPSKNRGTFPFQELGKIHENQKV
Ga0168796_119522	Ga0168796_1195221	F055715	LTKANEFDKMNELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAKILDN
Ga0168796_123652	Ga0168796_1236521	F068811	MDQDGSEHNICPNREGLCPGKEQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKVAVSLILNENVSETLCIFSID
Ga0168796_137169	Ga0168796_1371692	F076064	LKKTIPGRALDNLFYLQYDLPPEASFHATTEEAKRPDELYIRKLLPELTRLKLQPCHVVANDEAYYAAMKGISLFTPEAEKLMHRADYYSARRQIRLCAPDLKRRNEAKRPPKPALKFY