3300029125: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012083-87

Overview

Basic Information

• IMG/M Taxon OID: 3300029125
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0193003 | Ga0168738
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012083-87
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 118923890
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F047126	Metagenome	150	N
F067845	Metagenome	125	N
F068855	Metagenome	124	N
F078822	Metagenome	116	N
F088921	Metagenome	109	N
F090513	Metagenome	108	N
F090515	Metagenome	108	N
F101355	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168738_100899	All Organisms → cellular organisms → Bacteria	21684
Ga0168738_101246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	14890
Ga0168738_102345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	6659
Ga0168738_102913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	5124
Ga0168738_104522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	3064
Ga0168738_105907	All Organisms → cellular organisms → Bacteria	2327
Ga0168738_110397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1381
Ga0168738_111275	Not Available	1283
Ga0168738_116719	Not Available	904
Ga0168738_122315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	689

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168738_100899	Ga0168738_1008995	F090515	VTTCCKAGQKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS
Ga0168738_101246	Ga0168738_1012463	F068855	VEVQGPQVRKSLAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAAW
Ga0168738_102345	Ga0168738_1023454	F090513	MLKIFAIAKYVRKMEWKLLHITHILYMRPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFTY
Ga0168738_102913	Ga0168738_1029135	F042936	MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNVEKVEQEGALTPPYLGKVYFRSRLRGK
Ga0168738_104522	Ga0168738_1045221	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFSYVLPRCSYFFKIFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKI
Ga0168738_105907	Ga0168738_1059076	F047126	MTNILQTQAGFKSKSLGSLCGFQGSLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAHILSPLESPCILCSLLRYFHILSKKLQKTC
Ga0168738_110397	Ga0168738_1103972	F088921	LGATIRLYKIGAGKKHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSTMIRDKMRNK
Ga0168738_111275	Ga0168738_1112751	F078822	AFLKAFLPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0168738_116719	Ga0168738_1167191	F078822	PNAFLKAFHPHAIRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0168738_122315	Ga0168738_1223151	F067845	ALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAYAPELDNTAKAVAEWFVQEPDSLQVSGLDLVYTVALDADGNMSHTDDLNAFLYWSGCDGVPEDVTVALLLDDSAAMTAWLYAPQADSAAAKLLDDAAGHNEMGAAFIDYNGAAYVVAVFR