3300029115: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021299-74

Overview

Basic Information

• IMG/M Taxon OID: 3300029115
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0193140 | Ga0168848
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021299-74
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 157757247
• Sequencing Scaffolds: 7
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F060985	Metagenome / Metatranscriptome	132	N
F062845	Metagenome	130	N
F064817	Metagenome	128	N
F073656	Metagenome	120	N
F076064	Metagenome	118	N
F087335	Metagenome	110	N
F094005	Metagenome / Metatranscriptome	106	N
F097493	Metagenome	104	Y
F101357	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168848_100147	Not Available	85514
Ga0168848_100427	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	46089
Ga0168848_101061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	21897
Ga0168848_101431	All Organisms → cellular organisms → Bacteria	16625
Ga0168848_107518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	3604
Ga0168848_122541	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1103
Ga0168848_132272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	703

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168848_100147	Ga0168848_10014711	F044555	MKTTNPSSRITISQNGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLPQHHKR
Ga0168848_100147	Ga0168848_10014717	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKVIDFLRHAETNLGMCKIFDNQNHEFWHSVIKPWFQPERFGITHLWFTSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPPYKKYIPHRLRVLRLALKDLERIKEEYGKD
Ga0168848_100147	Ga0168848_10014718	F032312	MPKIKDYDEDLSAPKILRRRDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDAMVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0168848_100147	Ga0168848_10014719	F094005	MKKEIVKIKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE
Ga0168848_100147	Ga0168848_1001473	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTYIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV
Ga0168848_100147	Ga0168848_1001478	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLRANQYKLYPLLLDILKISLKDAYYNYSNTSNIHYEGGKFPSMLTIQLFNLEF
Ga0168848_100427	Ga0168848_10042717	F073656	MEQEQDQEQTQAALYVAVDDGNKIVAMERSRRGDEGFRALLDEFTDYAANRGEIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCCKYGLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWTFVNPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH
Ga0168848_101061	Ga0168848_10106121	F097493	MYKFYMKNGTAYFYERGVEIDGTVYGIHTDRDILRIKRRIVNDKFAETDDNFDMDTEIAKIQHTSITFKQPTSEQLSQIQAKTYNSMTELKQHVQSIMNGELTQDEINAMLMLQIAELKAGVDGE
Ga0168848_101431	Ga0168848_1014315	F013656	MASNTKKKLKNNIKKIYKEPLKSEMETTVNVMYGENKLSIYTNKVDLQKQLNKLIGEPIKEYKIKRSISGSLWEMSLNDKTKIQKVIVKANIYEL
Ga0168848_107518	Ga0168848_1075184	F087335	MIGLYFNDANVLTENREEEQYAEAALNSILAGKTADTVMCILPCFYDAPLHKGLLYNLDDGTTLQIRPILNEEGEPELFIRCVTKG
Ga0168848_122541	Ga0168848_1225413	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTKDYFSARRQIRLCAPDLKRRNETRRHPMPVLKLY
Ga0168848_132272	Ga0168848_1322721	F062845	ILHEKFRSDNNEQRKEDFQKEFERYIINGLLNAVPSRACT