3300029109: Human oral microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002637-96

Overview

Basic Information

• IMG/M Taxon OID: 3300029109
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0193288 | Ga0168978
• Sample Name: Human oral microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002637-96
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 94168894
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F051211	Metagenome	144	N
F063778	Metagenome	129	Y
F092231	Metagenome	107	Y
F095630	Metagenome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168978_100015	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	150044
Ga0168978_100404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	26845
Ga0168978_100744	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	16340
Ga0168978_101467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica	9500
Ga0168978_102409	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	6203
Ga0168978_104018	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	3984

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168978_100015	Ga0168978_10001596	F051211	MRVKKAIKIFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEYILKIRRQQYERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSSTATMASLKHLRVYRPHSLHERILSRLRRKLFRGNPKEFYTAIDKWLADTRAHQSS
Ga0168978_100404	Ga0168978_10040412	F063778	MPETISEEAKQELLQQLQDALGLVKNADTSAHDVAAITHSVADGHQLTEVMLQQMAGVKGYLENCRASINDAIGNIEAIPLDPPPKD
Ga0168978_100744	Ga0168978_10074416	F095630	MRYSPLYKTSKDNGLIAHVYEHLLAQYVLKYLQDKGFFISSDIILTAKTYGDTCYMDVELYNPAAPNAYNEALQVFDKHTIPEKAVRRAVSECGIEMNRAVLELKQDELMSNLSRMQSSDWRQQSEMTYRKSYDKSSVDTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAAIVMQAVALNFLVAVRENYTVYDRGDQWSEASLSVGYRMFLGLAKEDKQITSQLKHEFTAYIQYLLKSPFCSNLQKALLRCSCNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYDI
Ga0168978_101467	Ga0168978_1014678	F092231	MIIFAPQEFITWSNTLIQFPWPIQVDDFASYAERLGWTPTPRPTWFNVYANNDTRNVILGDDRSGNVRDLFLSMARNEAEDDEGAVELNDHFVSCVAAGRKAWGEPFLLEAGDGPSVTWRFPGDMFAQVISGRWSVLFDFFTPEGRRQFL
Ga0168978_102409	Ga0168978_1024091	F051211	MRVKKAIRIFEKIRDLPYGTSGSDEVWSCYRKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSSTATMASLKHLRVYRPHSLHERILSRLRRKLFRGNPKEFYTAIDKWLADTRAHQSS
Ga0168978_104018	Ga0168978_1040183	F033081	MYPPDLMVVHRPRKGIMAWLFRRAMPRDTRPTFVWPKLVATIEDARYLDRRWLTAVAAVLIAMTIAAVKALLLIPGLDSSVVNLLTRGFATFLPRGWATGAAWVAGAVGVFLIGDFTNYTKKQKSLHGLKATGCGVYDTLLLFALMEEQAFRSGGEKWSWRERVRASVCFGLAHVVNIWYSFAAGIALSVTGFGFLLVYLWYYRKYHSQIVATAAATTIHALYNVIALSLIAVVAVIYMAISICS