Sample 3300029104

Overview

Basic Information
IMG/M Taxon OID	3300029104 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127429 \| Gp0193512 \| Ga0169203
Sample Name	Human fecal microbial communities from mother in Denmark - 137_M
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	149110706
Sequencing Scaffolds	10
Novel Protein Genes	10
Associated Families	10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria	2
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	Denmark
Coordinates	Lat. (^o)	55.676097	Long. (^o)	12.568337	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F044554	Metagenome	154	N
F055715	Metagenome	138	N
F059106	Metagenome	134	N
F082887	Metagenome / Metatranscriptome	113	Y
F087335	Metagenome	110	N
F089005	Metagenome	109	N
F089054	Metagenome	109	N
F092228	Metagenome	107	N
F101355	Metagenome	102	N

Family

Category

Number of Sequences

3D Structure?

F013656

Metagenome

269

F044554

Metagenome

154

F055715

Metagenome

138

F059106

Metagenome

134

F082887

Metagenome / Metatranscriptome

113

F087335

Metagenome

110

F089005

Metagenome

109

F089054

Metagenome

109

F092228

Metagenome

107

F101355

Metagenome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0169203_100004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	341144	Open in IMG/M
Ga0169203_100184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	68590	Open in IMG/M
Ga0169203_103025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	6351	Open in IMG/M
Ga0169203_103913	All Organisms → cellular organisms → Bacteria	5166	Open in IMG/M
Ga0169203_108326	Not Available	2725	Open in IMG/M
Ga0169203_110034	Not Available	2329	Open in IMG/M
Ga0169203_111757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2033	Open in IMG/M
Ga0169203_114672	All Organisms → cellular organisms → Bacteria	1685	Open in IMG/M
Ga0169203_115924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	1574	Open in IMG/M
Ga0169203_154713	Not Available	518	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0169203_100004

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii

341144

Open in IMG/M

Ga0169203_100184

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii

68590

Open in IMG/M

Ga0169203_103025

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium

6351

Open in IMG/M

Ga0169203_103913

All Organisms → cellular organisms → Bacteria

5166

Open in IMG/M

Ga0169203_108326

Not Available

2725

Open in IMG/M

Ga0169203_110034

Not Available

2329

Open in IMG/M

Ga0169203_111757

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

2033

Open in IMG/M

Ga0169203_114672

All Organisms → cellular organisms → Bacteria

1685

Open in IMG/M

Ga0169203_115924

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium

1574

Open in IMG/M

Ga0169203_154713

Not Available

518

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0169203_100004	Ga0169203_100004199	F092228	MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVFDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDETDEYGYSFKVVKQYIFKKYDLKSCKLLKSKNANYVNVIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPAKIADKCDCDELLATKNFLYCYTINYILPRGVANSWVKGYLIDQLAIS
Ga0169203_100184	Ga0169203_1001841	F089005	IIALALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTKKHHKLR
Ga0169203_103025	Ga0169203_1030257	F087335	MIELYFNDANLLPENREEEQYAEAALNNILAGKTADTEICILPCFYDAPLHKGLLYHLNDGTTLRIRPVLNEAGEPELLIRCVTEESVETVYQRGANYD
Ga0169203_103913	Ga0169203_10391312	F089054	MLTKGKFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELNPYLRYPNQEINNNHLHSEHIRLQVREILDIPLRDITIVDIISLP
Ga0169203_108326	Ga0169203_1083264	F082887	MERVKTIAKYLTNILAIVSALVAGINAVDGITIPYAIQIVQVIAVVQGVIGTYLLGQKAINNKEE
Ga0169203_110034	Ga0169203_1100342	F059106	MHAIVWKIRVILLQTFVWIVDLKVREHLTGYLKKDIKYHRVTTGVHV
Ga0169203_111757	Ga0169203_1117573	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFCKKLLPYVLFFFFKIYLKKIDFFQNIA
Ga0169203_114672	Ga0169203_1146722	F055715	LTKANEFDKINELLIERTAKKFERASKNKLKKFLTNEKFCDKINKLIRVGTAKILDN
Ga0169203_115924	Ga0169203_1159241	F013656	MEKIYKEPNKSETETTINVLYSENMLSIYTNKVNLQKQLNKLLGAPTKEDKIKRSIAGSRWNISLDDKTKIQKIILKA
Ga0169203_154713	Ga0169203_1547131	F044554	FFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL

Scaffold ID

Protein ID

Family

Sequence

Ga0169203_100004

Ga0169203_100004199

F092228

MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVFDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDETDEYGYSFKVVKQYIFKKYDLKSCKLLKSKNANYVNVIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPAKIADKCDCDELLATKNFLYCYTINYILPRGVANSWVKGYLIDQLAIS

Ga0169203_100184

Ga0169203_1001841

F089005

IIALALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTKKHHKLR

Ga0169203_103025

Ga0169203_1030257

F087335

MIELYFNDANLLPENREEEQYAEAALNNILAGKTADTEICILPCFYDAPLHKGLLYHLNDGTTLRIRPVLNEAGEPELLIRCVTEESVETVYQRGANYD

Ga0169203_103913

Ga0169203_10391312

F089054

MLTKGKFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELNPYLRYPNQEINNNHLHSEHIRLQVREILDIPLRDITIVDIISLP

Ga0169203_108326

Ga0169203_1083264

F082887

MERVKTIAKYLTNILAIVSALVAGINAVDGITIPYAIQIVQVIAVVQGVIGTYLLGQKAINNKEE

Ga0169203_110034

Ga0169203_1100342

F059106

MHAIVWKIRVILLQTFVWIVDLKVREHLTGYLKKDIKYHRVTTGVHV

Ga0169203_111757

Ga0169203_1117573

F101355

MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFCKKLLPYVLFFFFKIYLKKIDFFQNIA

Ga0169203_114672

Ga0169203_1146722

F055715

LTKANEFDKINELLIERTAKKFERASKNKLKKFLTNEKFCDKINKLIRVGTAKILDN

Ga0169203_115924

Ga0169203_1159241

F013656

MEKIYKEPNKSETETTINVLYSENMLSIYTNKVNLQKQLNKLLGAPTKEDKIKRSIAGSRWNISLDDKTKIQKIILKA

Ga0169203_154713

Ga0169203_1547131

F044554

FFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029104: Human fecal microbial communities from mother in Denmark - 137_M

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences