Sample 3300029103

Overview

Basic Information
IMG/M Taxon OID	3300029103 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127429 \| Gp0193529 \| Ga0169220
Sample Name	Human fecal microbial communities from mother in Denmark - 179_M
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	143634350
Sequencing Scaffolds	15
Novel Protein Genes	15
Associated Families	15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Herelleviridae → unclassified Herelleviridae → Herelleviridae sp.	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → environmental samples → Faecalibacterium sp. CAG:74	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	Denmark
Coordinates	Lat. (^o)	55.676097	Long. (^o)	12.568337	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F029444	Metagenome	188	Y
F042737	Metagenome / Metatranscriptome	157	Y
F055775	Metagenome	138	N
F059982	Metagenome	133	N
F066905	Metagenome	126	Y
F068855	Metagenome	124	N
F070133	Metagenome	123	N
F071325	Metagenome	122	N
F072366	Metagenome	121	N
F081354	Metagenome	114	Y
F082715	Metagenome / Metatranscriptome	113	N
F087213	Metagenome	110	N
F087334	Metagenome	110	N
F102166	Metagenome	102	N

Family

Category

Number of Sequences

3D Structure?

F013656

Metagenome

269

F029444

Metagenome

188

F042737

Metagenome / Metatranscriptome

157

F055775

Metagenome

138

F059982

Metagenome

133

F066905

Metagenome

126

F068855

Metagenome

124

F070133

Metagenome

123

F071325

Metagenome

122

F072366

Metagenome

121

F081354

Metagenome

114

F082715

Metagenome / Metatranscriptome

113

F087213

Metagenome

110

F087334

Metagenome

110

F102166

Metagenome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0169220_100062	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Herelleviridae → unclassified Herelleviridae → Herelleviridae sp.	117605	Open in IMG/M
Ga0169220_100275	Not Available	45566	Open in IMG/M
Ga0169220_100711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	21271	Open in IMG/M
Ga0169220_101152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	13351	Open in IMG/M
Ga0169220_101348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	11469	Open in IMG/M
Ga0169220_102935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5921	Open in IMG/M
Ga0169220_104561	All Organisms → cellular organisms → Bacteria	4190	Open in IMG/M
Ga0169220_110072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2232	Open in IMG/M
Ga0169220_111449	Not Available	2029	Open in IMG/M
Ga0169220_116158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1528	Open in IMG/M
Ga0169220_116611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1493	Open in IMG/M
Ga0169220_118256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → environmental samples → Faecalibacterium sp. CAG:74	1378	Open in IMG/M
Ga0169220_121434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1197	Open in IMG/M
Ga0169220_124093	Not Available	1088	Open in IMG/M
Ga0169220_132658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	829	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0169220_100062

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Herelleviridae → unclassified Herelleviridae → Herelleviridae sp.

117605

Open in IMG/M

Ga0169220_100275

Not Available

45566

Open in IMG/M

Ga0169220_100711

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

21271

Open in IMG/M

Ga0169220_101152

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

13351

Open in IMG/M

Ga0169220_101348

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

11469

Open in IMG/M

Ga0169220_102935

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

5921

Open in IMG/M

Ga0169220_104561

All Organisms → cellular organisms → Bacteria

4190

Open in IMG/M

Ga0169220_110072

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

2232

Open in IMG/M

Ga0169220_111449

Not Available

2029

Open in IMG/M

Ga0169220_116158

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

1528

Open in IMG/M

Ga0169220_116611

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

1493

Open in IMG/M

Ga0169220_118256

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → environmental samples → Faecalibacterium sp. CAG:74

1378

Open in IMG/M

Ga0169220_121434

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

1197

Open in IMG/M

Ga0169220_124093

Not Available

1088

Open in IMG/M

Ga0169220_132658

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

829

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0169220_100062	Ga0169220_100062108	F042737	MKLTQKDSEVFNYVKNAGGHVSVDEICNAIGRNARSTGANVTSLQKKGLVEREKVEVEGAEKPVVYVNLTDAGATFVPSDDAE
Ga0169220_100275	Ga0169220_10027514	F055775	MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGAVEAIVLN
Ga0169220_100711	Ga0169220_10071110	F081354	LYQWDAAILLSYNTPPFSTPFLSEKRRWSLVRENQQSSAHNFVKNFSSIYPESRRRSPLKKGAVTENPLEYGKTEVQXXXXXXLFEPLPTTISSMELPKNFENKKLPNPLR
Ga0169220_101152	Ga0169220_10115216	F068855	VPTVEAQGPQVRKSLALQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGATW
Ga0169220_101348	Ga0169220_10134813	F013656	MKKIYKEAIKSEIETNINVLYSENKIVIYTNKVSLQKQLNKLIGEPTKEYKIKRSIAGSLWEVPLEDKTRIQKLIVKANIFEL
Ga0169220_102935	Ga0169220_1029353	F066905	MPDERNCGCGCNNGMFGGCGGDDCSILFFIIIFLLLFTNCGCGNRGCCN
Ga0169220_104561	Ga0169220_1045614	F082715	MMKFMKRSLSLLISAMLLLGCFALAEEAPLLPIAIVSYDLTDEATTAALSALIEPKENALTRWERVVLSDGREAWVICQFDQTTMSNAWSRVIDAETQEVLQEDTTDTGFFATAQTRWESAKGIYALWSIQDKMLFDRLYAMAPCYGEPVEGDLTQEEALAAALNVTGLTAADYDAVGYGYIMGSSEQNGTWQVFFVKGSEVVSTVNLDARDATILLVEPDEEGNG
Ga0169220_110072	Ga0169220_1100723	F072366	MLDILAIKADVYHLERQGKRLPVYRYLREVWQKEPPSEGLTVLALQQMVDYVEYVDDLTVLGEPWEAENEYDLYQDFLLDVISWGLQKYRAKKRFLWQICYYVNAWATFYYIFGREITQENVEQWKKTLFEEAKERYPDSLLFEFIPHAAQLDYVWFYRLTDEQQLQIRLEVGEWNLQKNNMDQAVQSYFDDAMTWYRDNGRKLLEAENKTNN
Ga0169220_111449	Ga0169220_1114491	F071325	FKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFSKAFHSHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0169220_116158	Ga0169220_1161583	F059982	MRRMTRLLCLMLLFSLITFSCPLAEGTTAPTGTPAPTPMLTAVPESALAPFNVVLPEDAHVEMAEGRITLVRGDSRVVAMVISRVPDADPAAALPVLMQDFDPKTSETMDFDAQPGFCILGGVVNDAFGDGEDKITLMVLADSGELLILSGYNLARDHHALYLFLTELLENVSMDGEAVYVAEDAAATASPEV
Ga0169220_116611	Ga0169220_1166112	F087213	MKKFSSVLLAVLLIFSCWTAATAESIDAVSGAPLDNDIEIVYKEHFDDMVTHYADELTEAELLVSADVYDAIGMIRFDSEDSLAARQRIYGIASADDLHAILTGYFDPNDAAYTADTALDARLQAILAACGLNPADYDISVIRNLSGMPEPITGTNWYCTLIRKGIEVAEDETNPYDMVIVLYGDEMTVGAFVLNPEV
Ga0169220_118256	Ga0169220_1182562	F102166	MKKLFSLLLVLVLALVPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRSNVLAYTALALDTMEEMVDYITEIANGESADNVFAMWQADIGAV
Ga0169220_121434	Ga0169220_1214342	F070133	VMMGGMAGAQASTDNVSMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEKIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKMMIYDWSFCACSDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNENVRDAACIGQTAYMRIRLTNEKSEILLYDITQQKITDSQTLLAVDDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQADVTTIEMDEKSHSYFVCSYSISAGE
Ga0169220_124093	Ga0169220_1240933	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRATALFEYREKHQ
Ga0169220_132658	Ga0169220_1326583	F029444	MEVSEQLTGFELEDLMSWTVSNLQCPFREDFSLQKSGIIAERESQIFGCRFVGFDGPKKRSPFSISKRRWSI

Scaffold ID

Protein ID

Family

Sequence

Ga0169220_100062

Ga0169220_100062108

F042737

MKLTQKDSEVFNYVKNAGGHVSVDEICNAIGRNARSTGANVTSLQKKGLVEREKVEVEGAEKPVVYVNLTDAGATFVPSDDAE

Ga0169220_100275

Ga0169220_10027514

F055775

MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGAVEAIVLN

Ga0169220_100711

Ga0169220_10071110

F081354

LYQWDAAILLSYNTPPFSTPFLSEKRRWSLVRENQQSSAHNFVKNFSSIYPESRRRSPLKKGAVTENPLEYGKTEVQXXXXXXLFEPLPTTISSMELPKNFENKKLPNPLR

Ga0169220_101152

Ga0169220_10115216

F068855

VPTVEAQGPQVRKSLALQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGATW

Ga0169220_101348

Ga0169220_10134813

F013656

MKKIYKEAIKSEIETNINVLYSENKIVIYTNKVSLQKQLNKLIGEPTKEYKIKRSIAGSLWEVPLEDKTRIQKLIVKANIFEL

Ga0169220_102935

Ga0169220_1029353

F066905

MPDERNCGCGCNNGMFGGCGGDDCSILFFIIIFLLLFTNCGCGNRGCCN

Ga0169220_104561

Ga0169220_1045614

F082715

MMKFMKRSLSLLISAMLLLGCFALAEEAPLLPIAIVSYDLTDEATTAALSALIEPKENALTRWERVVLSDGREAWVICQFDQTTMSNAWSRVIDAETQEVLQEDTTDTGFFATAQTRWESAKGIYALWSIQDKMLFDRLYAMAPCYGEPVEGDLTQEEALAAALNVTGLTAADYDAVGYGYIMGSSEQNGTWQVFFVKGSEVVSTVNLDARDATILLVEPDEEGNG

Ga0169220_110072

Ga0169220_1100723

F072366

MLDILAIKADVYHLERQGKRLPVYRYLREVWQKEPPSEGLTVLALQQMVDYVEYVDDLTVLGEPWEAENEYDLYQDFLLDVISWGLQKYRAKKRFLWQICYYVNAWATFYYIFGREITQENVEQWKKTLFEEAKERYPDSLLFEFIPHAAQLDYVWFYRLTDEQQLQIRLEVGEWNLQKNNMDQAVQSYFDDAMTWYRDNGRKLLEAENKTNN

Ga0169220_111449

Ga0169220_1114491

F071325

FKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFSKAFHSHAVRFPAAFLLVHRFYLAFEELLSCATAYL

Ga0169220_116158

Ga0169220_1161583

F059982

MRRMTRLLCLMLLFSLITFSCPLAEGTTAPTGTPAPTPMLTAVPESALAPFNVVLPEDAHVEMAEGRITLVRGDSRVVAMVISRVPDADPAAALPVLMQDFDPKTSETMDFDAQPGFCILGGVVNDAFGDGEDKITLMVLADSGELLILSGYNLARDHHALYLFLTELLENVSMDGEAVYVAEDAAATASPEV

Ga0169220_116611

Ga0169220_1166112

F087213

MKKFSSVLLAVLLIFSCWTAATAESIDAVSGAPLDNDIEIVYKEHFDDMVTHYADELTEAELLVSADVYDAIGMIRFDSEDSLAARQRIYGIASADDLHAILTGYFDPNDAAYTADTALDARLQAILAACGLNPADYDISVIRNLSGMPEPITGTNWYCTLIRKGIEVAEDETNPYDMVIVLYGDEMTVGAFVLNPEV

Ga0169220_118256

Ga0169220_1182562

F102166

MKKLFSLLLVLVLALVPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRSNVLAYTALALDTMEEMVDYITEIANGESADNVFAMWQADIGAV

Ga0169220_121434

Ga0169220_1214342

F070133

VMMGGMAGAQASTDNVSMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEKIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKMMIYDWSFCACSDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNENVRDAACIGQTAYMRIRLTNEKSEILLYDITQQKITDSQTLLAVDDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQADVTTIEMDEKSHSYFVCSYSISAGE

Ga0169220_124093

Ga0169220_1240933

F087334

MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRATALFEYREKHQ

Ga0169220_132658

Ga0169220_1326583

F029444

MEVSEQLTGFELEDLMSWTVSNLQCPFREDFSLQKSGIIAERESQIFGCRFVGFDGPKKRSPFSISKRRWSI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029103: Human fecal microbial communities from mother in Denmark - 179_M

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences