3300029102: Human fecal microbial communities from mother in Denmark - 103_M

Overview

Basic Information

• IMG/M Taxon OID: 3300029102
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193484 | Ga0169175
• Sample Name: Human fecal microbial communities from mother in Denmark - 103_M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 123392942
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.676097
  • Long. (^o): 12.568337
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044554	Metagenome	154	N
F047126	Metagenome	150	N
F062845	Metagenome	130	N
F067720	Metagenome	125	Y
F078822	Metagenome	116	N
F087334	Metagenome	110	N
F087336	Metagenome	110	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169175_100221	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	55844
Ga0169175_101345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	12144
Ga0169175_102930	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	5815
Ga0169175_103183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	5436
Ga0169175_105723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	3105
Ga0169175_106854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2606
Ga0169175_107198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2492

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169175_100221	Ga0169175_10022174	F067720	MASTTYRHLGDVTGMYAAQEQFREVTKMVTKRYRFAVIVNMVRNAGQLPQPFWLGAACGGGSCSLSASVARA
Ga0169175_101345	Ga0169175_1013454	F087336	MVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLGIAFQILPLKSKQKRAPQEVNSQSALSESNQLISP
Ga0169175_102930	Ga0169175_1029307	F078822	LSSTFFDIFLSFPNAFLKAFHPHAVQFPAAFLLVHRFYLAFEELLSCATAYL
Ga0169175_103183	Ga0169175_1031837	F047126	VYLKTKKMMNISQTQAGFKAKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0169175_105723	Ga0169175_1057231	F044554	FHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0169175_106854	Ga0169175_1068542	F062845	MEKTPFILHEKFRSDNNEQRKKQFQKRFEQYIVDELSNTVPSKSCA
Ga0169175_107198	Ga0169175_1071981	F087334	MANRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAASLFEYRENHQ