3300029101: Human fecal microbial communities from mother in Denmark - 157_M

Overview

Basic Information

• IMG/M Taxon OID: 3300029101
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193521 | Ga0169212
• Sample Name: Human fecal microbial communities from mother in Denmark - 157_M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 150114687
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.676097
  • Long. (^o): 12.568337
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F042936	Metagenome	157	N
F047126	Metagenome	150	N
F052660	Metagenome	142	N
F055715	Metagenome	138	N
F067845	Metagenome	125	N
F087335	Metagenome	110	N
F087336	Metagenome	110	N
F089005	Metagenome	109	N
F092228	Metagenome	107	N
F097493	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169212_100236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	75518
Ga0169212_100394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	51526
Ga0169212_101028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	23664
Ga0169212_101266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	19314
Ga0169212_101839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	13071
Ga0169212_101841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	13060
Ga0169212_102212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	10682
Ga0169212_103475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	6389
Ga0169212_106287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3501
Ga0169212_107646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2898
Ga0169212_121741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1000

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169212_100236	Ga0169212_10023673	F055715	LTKANEFDKINELLIERTAKKFEKASKNKLKKFLTSEKFCDKINELIRVGTAEILDN
Ga0169212_100394	Ga0169212_10039431	F092228	MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGSLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIVERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNSDCVYYISEKTESAIIRKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGMANSWVKGYLIDQLAIS
Ga0169212_101028	Ga0169212_10102811	F052660	MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDFAHWWPAAADHSRSADALPGKSNS
Ga0169212_101266	Ga0169212_10126619	F089005	LTKSKQRSIIALALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKDYSEMYTKKHQELRI
Ga0169212_101839	Ga0169212_1018394	F087336	MHCLLRGMVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP
Ga0169212_101841	Ga0169212_1018416	F087335	MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIKPTLNEVGEPELLIGCVTDETVGEVYQRVSNYDFDEPCAGSMPS
Ga0169212_102212	Ga0169212_1022122	F042936	VWKTKEGIMKTSGIVDRGEDTIRNFEKVEQKGALTPPYLGKLYFRSRLRGKG
Ga0169212_103475	Ga0169212_1034754	F047126	VYLKTKKMTNISQTQAGFKPKSLGILCGFQGSLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPLPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0169212_106287	Ga0169212_1062873	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAYAPELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALNADNNMSHTDDLNAFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAELLEDAAGHSELGAAFIDYNGTAYVVAVFR
Ga0169212_107646	Ga0169212_1076464	F032286	MRSMVKWVCQIVTPVRHRALIFDTRLFDGNAADDTLVTGNTFRFCRLMCPCVKRRNIMLNDKRHSLLNSALFRADNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRSQRFVLLGALDAALRQRTYPVRTVMQFSRFRCDYRTILAKNIALSRISKGSENAPKNADFHAYGQDRKRAE
Ga0169212_121741	Ga0169212_1217412	F097493	MYKFYMKNGTAYFYERGVEIDGTVYGIRTDSDILRIKRRIVNDKFAETDDNFDMDTEIAKIQHTSIIFKQPTSEQLSQIQSKTFDSMSDMKQYVQSVMNGDETMSQDEINAMLMLQIAELKAGVDGE