3300029087: Human fecal microbial communities from infant at 12 months in Denmark - 103_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300029087
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193481 | Ga0169172
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 103_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 70024170
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.676097
  • Long. (^o): 12.568337
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F062845	Metagenome	130	N
F097493	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169172_100102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	78819
Ga0169172_100103	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	78602
Ga0169172_100459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	20346

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169172_100102	Ga0169172_10010231	F062845	MKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNAVPPSSCA
Ga0169172_100103	Ga0169172_10010375	F029444	MEVSGQLTGFEREDLMSWTVSNLQRPLREDVSLEISGIIAEKESQIFGRRFVGFGGPKKAAPFFNF
Ga0169172_100459	Ga0169172_10045913	F097493	MYKFYMKNGTAYFYERGVEIDGTVYGIRTDSDILRIKRSVVNSKFAESEEDFDMNVEIAKIQHTSITFKQPTSEQLSQIQSKTFDSMSDMKQYVQSVMNGDETMSQDEINAMLMLQIAELKAGVGGE