3300029083: Human fecal microbial communities from infant at 12 months in Denmark - 181_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300029083
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193534 | Ga0169225
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 181_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 53618331
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.676097
  • Long. (^o): 12.568337
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F068811	Metagenome	124	N
F084124	Metagenome	112	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169225_100278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	30387
Ga0169225_102208	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	2975
Ga0169225_103976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1808

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169225_100278	Ga0169225_10027812	F084124	LNITALAFARATKENTLPFHGQRNELTVFLAFPVTMAIACFNKLSFSTQTTTLFAPEELLYRMIFMGAAQTRKPLKKLDLNFLII
Ga0169225_102208	Ga0169225_1022084	F026592	ILCCLRTASPQGIAALAAQGGVATLTERSDATFSVMQLFSADRE
Ga0169225_103976	Ga0169225_1039763	F068811	MDQDGSEHNICSNREGLCPGKKQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAVLLILNENVSETLCIFSIDKTNCCRI