3300029056: Human fecal microbial communities from mother in Denmark - 397_M

Overview

Basic Information

• IMG/M Taxon OID: 3300029056
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193693 | Ga0169699
• Sample Name: Human fecal microbial communities from mother in Denmark - 397_M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 179999657
• Sequencing Scaffolds: 7
• Novel Protein Genes: 25
• Associated Families: 25

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminiclostridium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F039198	Metagenome	164	Y
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F068811	Metagenome	124	N
F073656	Metagenome	120	N
F075481	Metagenome	119	N
F076653	Metagenome	118	N
F077313	Metagenome	117	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F083451	Metagenome	113	N
F083452	Metagenome	113	N
F085718	Metagenome	111	N
F089590	Metagenome	109	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F090515	Metagenome	108	N
F093883	Metagenome	106	N
F098313	Metagenome	104	N
F102167	Metagenome	102	N
F105374	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169699_100048	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	152041
Ga0169699_103002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminiclostridium	8488
Ga0169699_103220	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	7956
Ga0169699_104782	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis	5511
Ga0169699_117925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1619
Ga0169699_150286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	612
Ga0169699_160554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169699_100048	Ga0169699_100048118	F078005	MKKSKFVKELEKIIDMVKIEDDGFEYGGKVIFYKEDDDNYEITVKNIEMNLEVEANVMAGMDDMDFTCLMSEVYKQKAAKAIMMEKDDDEDN
Ga0169699_100048	Ga0169699_100048137	F083451	MIMDKNERERQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMKCRQEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNMDRLMAECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDIFKEEAKMTKETDRSKIEEFNKRLDHE
Ga0169699_100048	Ga0169699_100048146	F076653	MTIMDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYRCEYAPIDISSVLQTLIRLTENAKHMFEDQPGVYDMIPYRGFFLRDDFSSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDNFLGKEYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYDKGFKKRLAKRFNESLRGGGDLFGANLACMVCDRRDIDWEALRLWLDKYDEPTDKGMVNSPIQFMYLYLYYAFNK
Ga0169699_100048	Ga0169699_100048180	F098313	MREKKFDFVIYPLDLIITVGLDYKTLCDCFENMEPEHEGKWGDEDDMDKEASFANLVRDRDDDDKFAILWNFSSDDDLIMRNICHESFHIAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGDCVSGFINSKNTD
Ga0169699_100048	Ga0169699_100048194	F050794	MAPVGTLYIMQLDAFLHRKIMQDLRIQRVKVLMMLYTSNYFVNVRQKQLLDHTYALSRDQAFDYMAEFNKRLSDKVGIKCTMDVLLPTDDDNANIIIEHNGIIKKLMKEAEKLELDTDAIKAMMRDLLDELKDDIDLNILIFDVSQLLIKYNLFRLEAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKVVEMIETRYNRFVWREKINESHRWSNICNNI
Ga0169699_100048	Ga0169699_100048197	F077313	MSKYVIKRKIPKYQEAGEVGPYMLGNMDGIQGLGIEPLVNTNQGLPAPVNPLGIYSLDTPDQLRTKYANAFDQDNVFPASFKGSLQRIAENYQDNGITLNNITVNDVDKSKTGSGETDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGSNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGETPMEAMGQKHADGGTPVSLEEGTKVITDDTTIESDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALDKLKKNDKIDDENTRRLNASVLSKAINDSNETVNSLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGINTDERLNYYKTFNPVAYDAYMGASEGARARALQDAIYGQTSSWMGLATTENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEEPDVKLDMPELIDPNTLPKTNTNAGKSNSGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVETNRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGRYINEVEQGNVAQRTWADNVNAQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
Ga0169699_100048	Ga0169699_10004829	F075481	MMRLRISLRAVFCLGLSLSLSSCGSRRQVSEASIDSGLISRIETMIDEVMDRKIVEIKTSDLNADIVITERKFDTDKDVDPATGERPVSSQTDTHIVIGRRDSTVTADSVGVNKTRNDIKDLDNKIDIKSKDVDDKKGSRWPIAWIVAGISMILLVLVYILNRIKIL
Ga0169699_100048	Ga0169699_10004830	F089590	MLDKIGALWNIAIAYGTSCWAYFQPVHHLLEVLLVVLLANFIARLIQSARRWKVRRSRKRRFSLYRWFREVRLVGILKEFFLSCFIVMTLCVIYKTLSIEEDDASAILVVTKYGVYAALVAYVMLFLNTIGEAFPDTYIVKVFKSIFNRVNILKLFGSAKSLPDDAFDDIKKIADDEVKDKS
Ga0169699_100048	Ga0169699_10004833	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVFDPVVDNPFNTFVEFRSRKPGMANVDWGDGIKEQFPMTKAQGQDNYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQCCKMTAFPIVDIPGLEFLAVSHTRYVNDGIPTDKLLRSNKLIYIELSNVGQRMTEMPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKKLQTFELSSCYLDRYIKEFNDLPKLKTLDITPGPSDMWNYFDINTLPFFEVDKINPNITDFYFLKDWVSGERRTGWNDDNMSGRGLEHLTGLIAANSNSLRMDKLPDYIYEMRAITRFSVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAIHPTRNQRPSGTEQAPEGFVKGQSNGSPATPMEKIYVLKNNYAQRWTIKPE
Ga0169699_100048	Ga0169699_10004839	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLVYWESLNKINHIDDPESTSFGLPDDYLWFSNIKGAFSYKGCEVGDFVMWEAKNENVHELLGDDNNRPSFDYRETFYTIGDGKVVVYESGFRTEEVKMTYYRRPVRVDLSGYINAAGIQSTDIDPELPDYLVEEILDMVAKQFNLNENELQRYRFDKDNVASFR
Ga0169699_100048	Ga0169699_1000484	F064725	MIQLAREGRLDFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFRYHHPVRLSIGRGLRRDCAADKYRDKYAWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSHERMWPNAFDKYIKLI
Ga0169699_100048	Ga0169699_10004840	F089592	MKEILKSKKVLVEVNGFNIMSDTLYEVVGKHDESAPQAFQDANIAKAPFPENATHVCCPWDDFSEVYNTGFYPRSRCYNGMDKDEVDKLVDQRVNNIMKPFENISQKDLSQTNFEFWDDAKDKIYMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPIFMNSMFCFIEKDNAKDFVQQREINKMNISYKFINALKKGGKERQAVIDLLLYIGIVTRPDFTEDDYYTGSLSNWMNEKKTNIDYLLDIWDRSLEGDFKEVLEFYRIINVLQRNGRINMTPSGLQYNGQIIGPDTRTSAEFLATKKDLISVKANVLDEYEELMSISNIDDKTKTKKVKDVKKKEDVDGGDKVNTEE
Ga0169699_100048	Ga0169699_10004846	F093883	MMEDKDIKKEIRDYLKEEADTHIRHWLAIKRESKRLYSEIEDRTKKIALKSSSLIKEEDFVALHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDFDTTYASTAKSIMEDRTSGFVFYDDKERLRYADKELEDMFHDMSVMEVSKIGVVQSYKLLMKQYNEFKDMKANATGKTKAD
Ga0169699_100048	Ga0169699_10004851	F058555	METKIALLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVTAYLSIINVQKHVFLRNRMRDGYRDRIEINTDDFIDILSDGIAYFLYRHVIENCHEDIEYQLKTLKAYAEGEVRIALSDIMIYSYKAKKNEDTKDIFVGKKRSVYKCLDKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKNLIGIGMQEISQSTIYRYISMFLDMCKKSISDLYEEVVKNNGVVNTKDNNNVTIGHIRASYKGSVLHILISTDYIINVFLGKKSAEMSKAG
Ga0169699_100048	Ga0169699_10004868	F102167	MDINQIKKYLPLGWDVVDLIDHGIIDLDIMNGKMMGEYVAVLMIKSYDKTNGHILTTFSFHDKDMEKLRMLIGNAIMAVGYRNNPLTGDGNSAIK
Ga0169699_100048	Ga0169699_10004871	F083452	MSGRVKIKIKDKKPKIDVFKVIESRFKNMNELRDLIDMDPRKGLVMIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIDKYVKRK
Ga0169699_100048	Ga0169699_10004888	F080673	MNETELLRLQDEALSYLRDNITKDEAYYVLTTDKDMIEILIADKKDGSKRIKILDMEYTIEKDDMLLLFDTDGIIDECLLVASYIGVNMYFRRQDVNAILNNINREKVMEYPYIAIQLDNIRTIEKRRVIFEITGHRIDDNKEKIDFMFVYFMARIL
Ga0169699_100048	Ga0169699_10004894	F078006	MDNILKRAAAELKEAGCRVFAWQDDTYNRSWSKGDYIMLYYAFPDSPNIGYLSRGEYGMSVAYSRAYIPSRGSGSGCCIKEEATFDLATALDALNGPLPRWCKAYGVYPKQYDNIDKWYNRDNHNKKLFKEI
Ga0169699_100048	Ga0169699_10004896	F085718	MVIEFDFEIYKNGDYDKVYLRNGKEARVLCDNGKGDRPIVVMVEDDNADNYIILRYNETGRRNINSQSSLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSKNIRGNIYLQGSSKSSVSYYVDKLEEDECFDELCEKIRVKRDRIYNIEIISLSNDEAAI
Ga0169699_103002	Ga0169699_1030028	F039198	MQITSCEIANNMYIQIYLTEEELEKQETKELVDKYKQEKCRLAIFITGKENYPEILGKIITKQVELNRNVC
Ga0169699_103220	Ga0169699_1032206	F073656	MEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHNYLLDPSTVTEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGAVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIHTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH
Ga0169699_104782	Ga0169699_1047822	F105374	MKKRVALLVALCIWKVVAAQTPYGEMPERFWPDTLPCRLGGGVCFGMNGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP
Ga0169699_117925	Ga0169699_1179252	F068811	MDQDGSEHNICSNREGLCPGKEQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRIK
Ga0169699_150286	Ga0169699_1502862	F090515	FVRGACQEGVRTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS
Ga0169699_160554	Ga0169699_1605541	F029444	MEVSEQLTGFELEDLMSWTVFNLQRPFREDFSLKKSGIIAEKESQIFGRRFVGFDGPKKAAPFFNF