3300029051: Human fecal microbial communities from mother in Denmark - 350_M

Overview

Basic Information

• IMG/M Taxon OID: 3300029051
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193663 | Ga0169669
• Sample Name: Human fecal microbial communities from mother in Denmark - 350_M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 158985529
• Sequencing Scaffolds: 11
• Novel Protein Genes: 12
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → [Eubacterium] rectale	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047126	Metagenome	150	N
F059106	Metagenome	134	N
F067720	Metagenome	125	Y
F067844	Metagenome	125	N
F076189	Metagenome	118	N
F078004	Metagenome	117	N
F080163	Metagenome	115	N
F088921	Metagenome	109	N
F089005	Metagenome	109	N
F099451	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169669_100217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → [Eubacterium] rectale	84368
Ga0169669_100425	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	53789
Ga0169669_100535	Not Available	43536
Ga0169669_101783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	14448
Ga0169669_101815	All Organisms → cellular organisms → Bacteria	14216
Ga0169669_102191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	11855
Ga0169669_103499	Not Available	7243
Ga0169669_104693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	5292
Ga0169669_104902	All Organisms → cellular organisms → Bacteria	5037
Ga0169669_109527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2405
Ga0169669_112880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1730

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169669_100209	Ga0169669_10020927	F078004	LSSRNTDLLFRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTILIIGTIFHNTF
Ga0169669_100217	Ga0169669_1002171	F067844	MNTLAAETTSAWYLILNRKRQTLPIYISQLSSHLPRPLTMGTQQVSAGADVIT
Ga0169669_100425	Ga0169669_10042525	F099451	MAIDKIKTVGQLRKVIENLSDDYEIEMRIRRKLSDDEIRELHNKYGRIYPYPYETQYPELEFDDIGVSDKVLCLGVELKNE
Ga0169669_100535	Ga0169669_10053554	F067720	MASTTYRHLGDVTGMFAAQEQFRDITKMVCARFRGLTKTYHLGNVNKLVTFCHRFAVIGNMVRNAGQLPQPFWLGAACGGGSCGAARCAARP
Ga0169669_101783	Ga0169669_10178319	F089005	LTKSKQRSIIALALLRCATSNEESKQALKVRRTLKIEQRDNSKETRNDFEESSKNYSEMYTKKHQE
Ga0169669_101815	Ga0169669_1018155	F080163	MKTIKFLQESFETKERFQQEINIKYFYNQDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCDAKQFLESINDFDKILFVIITYMKTYFDFCKDYSNISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTELESQVLDSEIELLQEKLDLIREEICELIGIDPNLEKQGHEDNYVFNLNINSDNQIGFFLQATEL
Ga0169669_102191	Ga0169669_1021913	F076189	VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAYFDLYAIQSAQKQLRMLCNFHENTFGLLIFYTNYAIL
Ga0169669_103499	Ga0169669_10349913	F067720	MSSTAYEHFVDTNKMYAAQEQFRDITKMVCARFRGLAKTYEFAVLGNMVRNAGQLPQPFWLGA
Ga0169669_104693	Ga0169669_1046931	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGFQGSLTQNPAALVETDDIFGVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIARFCSQTAAASQSKSAYILSSLESPCILCSLLRNFHILSKKLQKT
Ga0169669_104902	Ga0169669_1049024	F059106	VILLQTFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV
Ga0169669_109527	Ga0169669_1095274	F067844	MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSAGAAVITPQHRSYRVPQGSPQVFGGP
Ga0169669_112880	Ga0169669_1128803	F088921	LGATIRLYKIGAGKNHFLSSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKDINGEIYGEKNQIIVANKSAMIRDKLRSK