3300029047: Human fecal microbial communities from infant at 12 months in Denmark - 263_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300029047
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193593 | Ga0169599
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 263_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 130040863
• Sequencing Scaffolds: 11
• Novel Protein Genes: 15
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F055715	Metagenome	138	N
F057001	Metagenome	137	Y
F075481	Metagenome	119	N
F076189	Metagenome	118	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F085718	Metagenome	111	N
F089590	Metagenome	109	N
F089591	Metagenome	109	N
F090515	Metagenome	108	N
F093883	Metagenome	106	N
F098313	Metagenome	104	N
F102167	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169599_103579	Not Available	5629
Ga0169599_104368	Not Available	4728
Ga0169599_104778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	4349
Ga0169599_104922	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	4242
Ga0169599_104948	All Organisms → cellular organisms → Bacteria	4223
Ga0169599_105508	Not Available	3826
Ga0169599_110085	All Organisms → Viruses → Predicted Viral	2145
Ga0169599_115096	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1454
Ga0169599_117129	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1288
Ga0169599_135326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	632
Ga0169599_138038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	589

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169599_103579	Ga0169599_1035795	F093883	MEENKDIKKEIRDYLKEESDTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKGIIEDKTSGFVFYDDKERLRYADKELEDMFHDMSVKEVSKIGVVQSYELLMKQYNEFKDIIKNNINSI
Ga0169599_104368	Ga0169599_1043684	F050794	MAPVGTLYIMQLDAFLHRKIMQDLRIQRVKVLMMLYISNYFVKVRQKQLLDHAYSLSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANTIIEHNGIIKKLMKEAEKLELDTDAIKTMMRDLLGELKDDIDLNILIFDVSQLLTKYNLFRLEAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYDYALYITEEYN
Ga0169599_104778	Ga0169599_1047783	F055715	MNELLIERTAKKFERTSKNKLKKFLTNEKFRDKINELIRVGTAEILDN
Ga0169599_104922	Ga0169599_1049225	F102167	MDINQIKKYLPAGWDVVDLIDHGIIDLDIMNGKMMGEYVAMLMIRSYKKATKSYTLTSFSFHDKDTDKLRMLIGNAIMAVGYRDNPLTGDGNTTIK
Ga0169599_104948	Ga0169599_1049482	F098313	MREMEFDFVIYPLRSIITVGPDYKTLCDRFENMEPEHEGKWGDEDDMDKEASFANLVRDRDDDDKFAILWNFSSDDDLIMRNICHESFHIAMSVCQSCDMSLGFKVGEDEHAAYIAGFAGDRVSEFINSKNTD
Ga0169599_105508	Ga0169599_1055082	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKAQGRDDYCIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDMPGLEFLAVSHTMYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNIQTLELSSCYLDRYIKEFNDLPKLTSLKIHPGPSDMWNYFDINTLPFFEVDKINPNITDFCFLDDWVSGERRTGWNDDNTSGRGLEHLTSFVAAHSNGLRMDKLPDYIYEMRAITRFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYIAAXXXXQPKTSVLPARSRPQRDS
Ga0169599_105508	Ga0169599_1055084	F089590	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLIVLLIVLIANFLARLAQSIRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFSDAYLVKVFKAVFKRINVFKMFSFSKNIPDETFDDIRRIADDEVKDKS
Ga0169599_105508	Ga0169599_1055085	F075481	MMRLRISLRAIVCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSRTDAHIVIGRRDSTVTTDSLGVDKTITGIEDIDKKTDIKHKDIDDKEESRWPMAIIFMSILGILVVLFVLLKRFGLIK
Ga0169599_110085	Ga0169599_1100851	F078006	GDNILRKAADELKKAGCGVFAWQDDTYNRGWSKGDYTMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSRGSGSGCRVKEEATFDLEAALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI
Ga0169599_110085	Ga0169599_1100853	F085718	MVIEFDFEIYENGDYDKVYLRDGKEARVLCDNGKGNRPMVVMVEDDNANDYIVLRYNETGRRDINSQSSLDLMLSVKEREPESWVVVISYMDNKDQGQKMVLPNFFSRNIRGDIYLQGSPKSSVSYYVDKLEEDKCLDELCEKIRVKRDRIYNMEIISLSDDEETV
Ga0169599_115096	Ga0169599_1150962	F080673	MDEIELLRLQDEALSYLRDNITKDEAYYILTTDKDIIGILIADKKDGSERIKILDMEYTVGKDDMLLLFDTDGIIDECLLVASYIGVNIYFRGQDVNAILNNIDRGKVMEYPYIAIQLDNIRTIEKRRVIFEITGHRMNDNKERIDFMFVYFMARILWERGGL
Ga0169599_117129	Ga0169599_1171291	F057001	MISKEINKVQNEVKKSNEKTLTGAVKAWCNLFKSGKEINDILKENDIKVSKEVVPALVALAKDKEVVIRLCKEILPRVNNTFCAYKEVEREYYDKNEQDKNKKLKMSEIEDIAILGSSHKRFGYNEPIEYDFGIYYETFNGADKRIIKCAVPIKRYTFNLIAKCVTYHLTHPKNER
Ga0169599_135326	Ga0169599_1353261	F090515	PGRVACLEFAGGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS
Ga0169599_138038	Ga0169599_1380381	F076189	RQAVLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSVHFDLRAIQSAQKQLRMLCNFHENTFWLLIFYANYAIL
Ga0169599_139016	Ga0169599_1390161	F089591	YLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLVYWESLNKINHIDDPESTSFGLPDDYLWFSNIKGAFSYNGCEVGDFVMWEAKNENVHELLGDDNNRPSFDYRETFYTIGDGKVVVYEDGFRTDEVRMTYYRNPVRVDLAGYINAAGERSTDIDPELPDPLVEEILDM