NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029046

3300029046: Human fecal microbial communities from mother in Denmark - 326_M



Overview

Basic Information
IMG/M Taxon OID3300029046 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127429 | Gp0193635 | Ga0169641
Sample NameHuman fecal microbial communities from mother in Denmark - 326_M
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size123490001
Sequencing Scaffolds6
Novel Protein Genes10
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes putredinis1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationDenmark
CoordinatesLat. (o)55.678Long. (o)12.531Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013656Metagenome269Y
F032312Metagenome / Metatranscriptome180N
F044555Metagenome / Metatranscriptome154N
F055715Metagenome138N
F055775Metagenome138N
F064817Metagenome128N
F068811Metagenome124N
F073656Metagenome120N
F094005Metagenome / Metatranscriptome106N
F105375Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0169641_100178All Organisms → cellular organisms → Bacteria59819Open in IMG/M
Ga0169641_100221All Organisms → cellular organisms → Bacteria49682Open in IMG/M
Ga0169641_100245All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes putredinis46230Open in IMG/M
Ga0169641_100390All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales33135Open in IMG/M
Ga0169641_101917All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii8344Open in IMG/M
Ga0169641_111357All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1845Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0169641_100178Ga0169641_10017851F013656MEKKIYKEVNKNETETTINVLYKEEKICIYTNKVDLQKQLNKLLGEPTKEYKIKRSIVGSSWEIDFKEKSKISQMILKANIYEL
Ga0169641_100221Ga0169641_10022124F094005MKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTPENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE
Ga0169641_100221Ga0169641_10022125F032312MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVVWFIVFLYGLILRI
Ga0169641_100221Ga0169641_10022132F044555MKTTKPSSRITLSQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNIPTVPDLEKPIEIQVSTTRQISLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0169641_100221Ga0169641_10022142F105375MKKIETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDEFAIYSFLFQTPDTSNGAADAMVNFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0169641_100221Ga0169641_10022144F064817MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYREYKSRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0169641_100245Ga0169641_1002455F073656MTMEQDQEQMQGALYVAVDDGNKIVAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWTFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGTEFHLKRH
Ga0169641_100390Ga0169641_10039027F055775MAQIAQQDNLVIEVTTTAAALDGDTKNKLIACIEGGTIADVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGVVEAIALN
Ga0169641_101917Ga0169641_1019172F068811MDQDESEHNICSNREGLCPGKKQHGASGWKKIFQHGKEPLRSKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI
Ga0169641_111357Ga0169641_1113572F055715LTKANEFDKINELLIERTAKKFERASKNKLKKFLTNERFYDKINELIRVGTAKILDN
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