Sample 3300029041

Overview

Basic Information
IMG/M Taxon OID	3300029041 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127429 \| Gp0193678 \| Ga0169684
Sample Name	Human fecal microbial communities from infant at 12 months in Denmark - 385_12M
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	109509083
Sequencing Scaffolds	11
Novel Protein Genes	14
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	Denmark
Coordinates	Lat. (^o)	55.678	Long. (^o)	12.531	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F042936	Metagenome	157	N
F055715	Metagenome	138	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F067720	Metagenome	125	Y
F068811	Metagenome	124	N
F071325	Metagenome	122	N
F078822	Metagenome	116	N
F080163	Metagenome	115	N
F088914	Metagenome	109	N
F092228	Metagenome	107	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F032312

Metagenome / Metatranscriptome

180

F042936

Metagenome

157

F055715

Metagenome

138

F060985

Metagenome / Metatranscriptome

132

F064817

Metagenome

128

F067720

Metagenome

125

F068811

Metagenome

124

F071325

Metagenome

122

F078822

Metagenome

116

F080163

Metagenome

115

F088914

Metagenome

109

F092228

Metagenome

107

F101357

Metagenome / Metatranscriptome

102

F105375

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0169684_100210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	57308	Open in IMG/M
Ga0169684_100403	Not Available	35408	Open in IMG/M
Ga0169684_100700	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	22568	Open in IMG/M
Ga0169684_101339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	12037	Open in IMG/M
Ga0169684_101448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	11098	Open in IMG/M
Ga0169684_101750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	9129	Open in IMG/M
Ga0169684_102313	All Organisms → cellular organisms → Bacteria	6773	Open in IMG/M
Ga0169684_102369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	6596	Open in IMG/M
Ga0169684_102442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6411	Open in IMG/M
Ga0169684_103688	All Organisms → cellular organisms → Bacteria	3974	Open in IMG/M
Ga0169684_111698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	1308	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0169684_100210

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

57308

Open in IMG/M

Ga0169684_100403

Not Available

35408

Open in IMG/M

Ga0169684_100700

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

22568

Open in IMG/M

Ga0169684_101339

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

12037

Open in IMG/M

Ga0169684_101448

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

11098

Open in IMG/M

Ga0169684_101750

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii

9129

Open in IMG/M

Ga0169684_102313

All Organisms → cellular organisms → Bacteria

6773

Open in IMG/M

Ga0169684_102369

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii

6596

Open in IMG/M

Ga0169684_102442

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

6411

Open in IMG/M

Ga0169684_103688

All Organisms → cellular organisms → Bacteria

3974

Open in IMG/M

Ga0169684_111698

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae

1308

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0169684_100210	Ga0169684_1002102	F055715	LTKANEFDKINELLIERTAKKLKKTSKNKSKKFLTNEKLCDKINELVRVGAAKILDN
Ga0169684_100403	Ga0169684_10040313	F067720	MASTTYHHLGDVTGMYAAQEQFRGLTKMVTKCHRFASIGNMVRNAGQLPQPFWLGAACGGGSCSLSASVARA
Ga0169684_100700	Ga0169684_10070010	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGKFIVFSAWYAAKALETDVK
Ga0169684_101339	Ga0169684_1013396	F068811	MDQDGSEHNICSNREGLCPGKKQHGASGWKKIFQRGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIEKTNCCRI
Ga0169684_101448	Ga0169684_1014484	F042936	VWKTKEGIMKTSGIVNRGEDTIRNFEKVEQKRALTPPYLGKVYFRLRLRGKG
Ga0169684_101750	Ga0169684_1017509	F092228	MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKILDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAXXXXXXXXXERIFEDKTDEYGYSFKVVKQYIFKKYDLKSCKLLKSKNANYVNVIHYVTVCQDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVANSWVKGYLIDQLAIS
Ga0169684_102313	Ga0169684_1023133	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKVIDFLRHAETNLGMCRIFDNQNHEFWHSVIKPWFKPERFGITHLWFPSGFSFIGYGEYHIIRGNRWLKTPIDKIDKEDRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD
Ga0169684_102313	Ga0169684_1023134	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMILLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0169684_102369	Ga0169684_10236912	F105375	MKNNETLQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0169684_102369	Ga0169684_10236914	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPVHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLTHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0169684_102369	Ga0169684_1023699	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLIQKESHMLSKVWLKTNIYNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDDFYNYSNASNIHYEGGKFPSMLTIQLFNLEF
Ga0169684_102442	Ga0169684_1024427	F078822	HFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLTFEELLSCATAYL
Ga0169684_103688	Ga0169684_1036881	F071325	FKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLDFEELLSCATAYL
Ga0169684_111698	Ga0169684_1116982	F080163	MKTIKFLQESFETKERFQQEISIKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKTNFCSANQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHIHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESQVLDSENELLQEKLDLIREEICELIGIDPNLEKQGYEDNYVFNLNIESDNQIGFFLQATEL

Scaffold ID

Protein ID

Family

Sequence

Ga0169684_100210

Ga0169684_1002102

F055715

LTKANEFDKINELLIERTAKKLKKTSKNKSKKFLTNEKLCDKINELVRVGAAKILDN

Ga0169684_100403

Ga0169684_10040313

F067720

MASTTYHHLGDVTGMYAAQEQFRGLTKMVTKCHRFASIGNMVRNAGQLPQPFWLGAACGGGSCSLSASVARA

Ga0169684_100700

Ga0169684_10070010

F088914

VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGKFIVFSAWYAAKALETDVK

Ga0169684_101339

Ga0169684_1013396

F068811

MDQDGSEHNICSNREGLCPGKKQHGASGWKKIFQRGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIEKTNCCRI

Ga0169684_101448

Ga0169684_1014484

F042936

VWKTKEGIMKTSGIVNRGEDTIRNFEKVEQKRALTPPYLGKVYFRLRLRGKG

Ga0169684_101750

Ga0169684_1017509

F092228

MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKILDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAXXXXXXXXXERIFEDKTDEYGYSFKVVKQYIFKKYDLKSCKLLKSKNANYVNVIHYVTVCQDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVANSWVKGYLIDQLAIS

Ga0169684_102313

Ga0169684_1023133

F060985

MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKVIDFLRHAETNLGMCRIFDNQNHEFWHSVIKPWFKPERFGITHLWFPSGFSFIGYGEYHIIRGNRWLKTPIDKIDKEDRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD

Ga0169684_102313

Ga0169684_1023134

F032312

MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMILLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS

Ga0169684_102369

Ga0169684_10236912

F105375

MKNNETLQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV

Ga0169684_102369

Ga0169684_10236914

F064817

MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPVHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLTHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI

Ga0169684_102369

Ga0169684_1023699

F101357

MNLNNITTALKTGITIYQYEQWQNTGSVNLIQKESHMLSKVWLKTNIYNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDDFYNYSNASNIHYEGGKFPSMLTIQLFNLEF

Ga0169684_102442

Ga0169684_1024427

F078822

HFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLTFEELLSCATAYL

Ga0169684_103688

Ga0169684_1036881

F071325

FKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLDFEELLSCATAYL

Ga0169684_111698

Ga0169684_1116982

F080163

MKTIKFLQESFETKERFQQEISIKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKTNFCSANQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHIHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESQVLDSENELLQEKLDLIREEICELIGIDPNLEKQGYEDNYVFNLNIESDNQIGFFLQATEL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029041: Human fecal microbial communities from infant at 12 months in Denmark - 385_12M

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences