3300029030: Human fecal microbial communities from mother in Denmark - 367_M

Overview

Basic Information

• IMG/M Taxon OID: 3300029030
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193667 | Ga0169673
• Sample Name: Human fecal microbial communities from mother in Denmark - 367_M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 120591751
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium VE202-28	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F047125	Metagenome / Metatranscriptome	150	N
F054110	Metagenome	140	N
F055715	Metagenome	138	N
F067844	Metagenome	125	N
F076064	Metagenome	118	N
F090515	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169673_100930	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	14326
Ga0169673_101357	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	10319
Ga0169673_102962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5197
Ga0169673_113310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium VE202-28	1505
Ga0169673_117626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1197
Ga0169673_135584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	658
Ga0169673_140376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	592
Ga0169673_149425	Not Available	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169673_100930	Ga0169673_1009302	F055715	LTKANEFDKINELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAEILDN
Ga0169673_101357	Ga0169673_1013573	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSVRRQIRLCAPDLKRRNEAKRPPKPALKFY
Ga0169673_102962	Ga0169673_1029621	F026592	SPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE
Ga0169673_113310	Ga0169673_1133103	F026592	SPQGIAALAAQGGVATLTERSDATFFVGQFSSADRE
Ga0169673_117626	Ga0169673_1176263	F067844	MNTLAAETASAWYLILNRKRPPKRAVASYFNMTQFSSHLPRPLTMGTQQVSAGAA
Ga0169673_135584	Ga0169673_1355842	F054110	VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGD
Ga0169673_140376	Ga0169673_1403762	F047125	MDVALLLMVLGVMLSGFRAADALDYMRKEILRQEGKRRGWWS
Ga0169673_149425	Ga0169673_1494251	F090515	VTTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKALTFTALLCRHIGSIRTFLKS