3300029027: Human fecal microbial communities from mother in Denmark - 274_M

Overview

Basic Information

• IMG/M Taxon OID: 3300029027
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193615 | Ga0169621
• Sample Name: Human fecal microbial communities from mother in Denmark - 274_M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 132769321
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055715	Metagenome	138	N
F067720	Metagenome	125	Y
F078822	Metagenome	116	N
F087334	Metagenome	110	N
F087335	Metagenome	110	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169621_100576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	30715
Ga0169621_101377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	15958
Ga0169621_101593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	13949
Ga0169621_108798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2540
Ga0169621_127222	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	715
Ga0169621_130245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	633

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169621_100576	Ga0169621_10057629	F087335	MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYQAPMCKGVLINLDDGTTLRIEPFLNKEGEPELLIGCVTEETVGEVYQWVSNYD
Ga0169621_101377	Ga0169621_1013771	F055715	LTKANEFDKMNELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAEILDN
Ga0169621_101593	Ga0169621_1015931	F055715	LTKANEFDKINELLIERTAKKFERASKKRLKKFLTNEKLCDKINELIRVRTAKILDN
Ga0169621_108798	Ga0169621_1087983	F087334	MASRYPFVGAAAYLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLTITFLYHPKDFFLYRAAALFEYREKHQ
Ga0169621_127222	Ga0169621_1272223	F067720	MASTTYRHIGDLTDMFAVQEQFRDITKMVCARLRGLTKTYHFAVIGNMVRNAG
Ga0169621_130245	Ga0169621_1302453	F078822	FDIFLSFPNAFLKAFHPHAIRFPAAFLLVHRFYLAFEELLSCATAYL