3300029019: Human fecal microbial communities from infant at 12 months in Denmark - 341_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300029019
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193648 | Ga0169654
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 341_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 75123082
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F062845	Metagenome	130	N
F067844	Metagenome	125	N
F084124	Metagenome	112	Y
F092227	Metagenome	107	N
F097172	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169654_100155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	50958
Ga0169654_100193	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	45490
Ga0169654_100251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	37477
Ga0169654_100260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	36183
Ga0169654_100480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	19178
Ga0169654_101514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	6268
Ga0169654_103402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3054
Ga0169654_105792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	1941
Ga0169654_106908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1680
Ga0169654_108004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	1483

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169654_100155	Ga0169654_10015513	F084124	LLFGGLNKQAKAFARATKEIHFIFHSQRNALTMFLAFLFIMAVTCFNKLSLNTQTAWLFAPDKLLYRKILWALPKPAIFEKIE
Ga0169654_100193	Ga0169654_10019311	F084124	LNATAKAFARATKGNKHHFHSQRNTLTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLYLKIFMGAAQTRNF
Ga0169654_100251	Ga0169654_1002512	F092227	MNEQKHKRLLRIGCLLLAGVFALSLLGSVLMMLLF
Ga0169654_100260	Ga0169654_1002608	F062845	MEKTPFILHEEFRSDNNEQRKEHFQKKFERYIVDELSNAAPSKSCA
Ga0169654_100480	Ga0169654_1004806	F084124	LLFGGLNKQAKAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDELLXXXXXXXEDFMGAAQTRNF
Ga0169654_101514	Ga0169654_1015141	F067844	MNTLAAETTSAWYLILNRKRQTLPIYISQLSSHLPRPLTMGTQQVSAGADVITPQHRSYRVPQGSPQVFGGP
Ga0169654_103402	Ga0169654_1034021	F026592	PQGIAALAAQGGVATLTERSDATFSVKQFSSADRE
Ga0169654_105792	Ga0169654_1057922	F097172	AVLAAACVATAVVPAMADDVITAEAATKKVTSAYRYHIDGYNKNGYPASYSKASFYKDLNSLPAVKMGKTTINVPAVTSSVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCLSEGIYKSVKEGKKYKLEYLYPDTVGNYGDLYENNYLARLRTILDNYKEEHPEYADVIEETYEYQKDFVNKYPVAKDKFTTKLKKGQTYVFVIDNSLGKTTCKPYFTTHGYNEQSCLYNTNYLKAYSFDMNIEYKK
Ga0169654_106908	Ga0169654_1069081	F026592	RTASPQGIAALAAQGGVATLTERSDETFSVVQFSSADRE
Ga0169654_108004	Ga0169654_1080043	F097172	MKKNVLKKLMCAVLAATCVATAVVPAMADDVVTAEAATKKVTSVYKYHLEGYDKKGYPVKFSKSSFYKDLNSLPAVKMGKTTINVPAVTASVKSVSKEKGNPRYQSFVKFKAPKTGKYVVTLNNLQGTDDKSLKSLYYDVFKPIKDGGKYTLELIDYDIVGDYTMLYENNYLARLRTILDNYKAEHPEYANVIEYDYNDYTDFVNKYPVDKIKFTTKLKKGQTYVYVIDNALGRTTCKPYFTTHGSDEQSCLYNTNYLKAYSFDMNIEYRK