3300029016: Human fecal microbial communities from infant at 12 months in Denmark - 272_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300029016
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193608 | Ga0169614
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 272_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 82927920
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F047125	Metagenome / Metatranscriptome	150	N
F078693	Metagenome	116	N
F089005	Metagenome	109	N
F092227	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169614_100818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	19736
Ga0169614_100993	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	16380
Ga0169614_101468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	10351
Ga0169614_102016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	6522
Ga0169614_104503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2066

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169614_100818	Ga0169614_1008181	F089005	LTKLKQRSIITLALLRLATSNEESKQALKVRRTLKIEQRDNSKETRNDFEESSKNY
Ga0169614_100993	Ga0169614_1009938	F047125	MDVALLLMVLGVMLSGFWAADALDHMRKEIIRQEGKRRGWWS
Ga0169614_101468	Ga0169614_1014682	F092227	MNEQKRKRILRVGCLILAGAFLLSVLGSVILMFLV
Ga0169614_102016	Ga0169614_1020169	F078693	MVLAPVRGAERFYIKANCSLLMSKENQKTTSDFDALDPRERGCSPLSDPKGEV
Ga0169614_104503	Ga0169614_1045036	F026592	ILCCLRTASPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE