3300029009: Human fecal microbial communities from infant at 4 months in Denmark - 377_4M

Overview

Basic Information

• IMG/M Taxon OID: 3300029009
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193669 | Ga0169675
• Sample Name: Human fecal microbial communities from infant at 4 months in Denmark - 377_4M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 49012525
• Sequencing Scaffolds: 1
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169675_100048	Not Available	86523

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169675_100048	Ga0169675_100048102	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKYEIIKVIDFLRHAETNLGMCRIFDNQNHELWHSVIKPWFKPERFGITHLWFPSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIYGYWFPYYKKYIPHRIKVLKLALKDLERIKEEYGKD
Ga0169675_100048	Ga0169675_100048103	F032312	MPKIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMILLWPIVFIYALHDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0169675_100048	Ga0169675_10004887	F064817	MNIKNLFNKFRKREPELSYSLNLIYLEDTKVVFNPNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0169675_100048	Ga0169675_10004889	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTSDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0169675_100048	Ga0169675_10004892	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSESDIQEYNEWLDANQYKLYPLLLDILKISLKDDFHNYSNTSNTHYEGGKFPSMLTIQLFNLEF
Ga0169675_100048	Ga0169675_10004897	F044555	MKTKITINQNGNQILSCKVCKDIHNILFMSNEGILELISGLNYMGNLPTVPDLEKPIEIQITIIREIPLEQNKRVQTKIKEIIYNNLYDTLVEELKDTISRFQAQYNIQEINPYISDILQNPEDLISHSNTKDK