3300029008: Human fecal microbial communities from infant at 12 months in Denmark - 326_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300029008
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193632 | Ga0169638
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 326_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 67282830
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F062845	Metagenome	130	N
F078693	Metagenome	116	N
F097493	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169638_100432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	30774
Ga0169638_101629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	6215
Ga0169638_102577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3534
Ga0169638_105034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1533
Ga0169638_108023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	897

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169638_100432	Ga0169638_10043210	F062845	MKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNALPSRSCA
Ga0169638_101629	Ga0169638_1016291	F078693	MVLAPVRGAERFFIKANCSLLMSKENQKTTSDFDALDPRERGYSPLSDPEGVVEAQKC
Ga0169638_102577	Ga0169638_1025771	F026592	ASPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE
Ga0169638_105034	Ga0169638_1050344	F097493	MYKFYMKNGTAYFYEHGVEIDGTVYGIHTDRDILRIKRSVVNNKFAETDDNFDMDTEIAKIQHTDVTLEQPTSEQLSQIQSKTFDSMSDMKQYVQSVMNGELTQDEINAMLLLQIAELKAGVSNE
Ga0169638_108023	Ga0169638_1080232	F026592	SPQGIAALAAQGGVATLTERSDATFSVKQFSSADGE